RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 NAT8BQ9UHF3 227 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 ERG28Q9UKR5 140 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 RNF11Q9Y3C5 154 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 RBM7Q9Y580 266 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 TNS3Q68CZ2 1445 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 FGD6Q6ZV73 1430 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 PRG4Q92954 1404 aaPredicted RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 ERBINQ96RT1 1412 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 TRAPPC8Q9Y2L5 1435 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 KDM5CP41229 1560 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 ARHGEF28Q8N1W1 1705 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 FN1P02751 2386 aaKnown RBP0.69□□□□□ -2.3
VPS35-207ENST00000568191 CPAMD8Q8IZJ3 1885 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 RTL9Q8NET4 1388 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 CCNB3Q8WWL7 1395 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 ARHGEF11O15085 1522 aa0.69□□□□□ -2.3
VPS35-207ENST00000568191 MUC16Q8WXI7 14507 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 TCOF1Q13428 1488 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 BCL9LQ86UU0 1499 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 WDR97A6NE52 1622 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 RIMBP3CA6NJZ7 1639 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 RIMBP3BA6NNM3 1639 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 RIMBP3Q9UFD9 1639 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 STRCP1A6NGW2 1772 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MYLKQ15746 1914 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 IGHV3-15A0A0B4J1V0 119 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 IGHV1-58A0A0C4DH39 117 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MDFIC2A0A1B0GVS7 189 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 ODAMA1E959 279 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MEIS3P1A6NDR6 274 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 C17orf98A8MV24 154 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 FAM25AB3EWG3 89 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 FAM25CB3EWG5 89 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 FAM25GB3EWG6 89 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 K7ERJ3 54 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 K7ERU9 68 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 M0R2Z0 102 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 GNG7O60262 68 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 LYZL6O75951 148 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 CST7O76096 145 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 NAPSAO96009 420 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 IFNGP01579 166 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MT-ND4LP03901 98 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 CXCL1P09341 107 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 FABP2P12104 132 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 CCL5P13501 91 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 KDELR1P24390 212 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 SDC2P34741 201 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 SRP14P37108 136 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 XCL1P47992 114 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 RAB5CP51148 216 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 DYNLT3P51808 116 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 TMBIM6P55061 237 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 FXYD7P58549 80 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 RRAS2P62070 204 aaPredicted RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 RPS25P62851 125 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 EIF5AP63241 154 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 EMX2Q04743 252 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 AKR1C1Q04828 323 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 CHD3Q12873 2000 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 KISS1Q15726 138 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 NEDD8Q15843 81 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MIAQ16674 131 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 FAM229BQ4G0N7 80 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 FRMPD1Q5SYB0 1578 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 GLYATL3Q5SZD4 288 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MYOM3Q5VTT5 1437 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 C22orf39Q6P5X5 142 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 TMEM14EPQ6UXP3 125 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 C4orf22Q6V702 233 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 ZNF705AQ6ZN79 300 aaPredicted RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 ZNF767PQ75MW2 155 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MIR17HGQ75NE6 70 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 PHF5AQ7RTV0 110 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 TRAPPC6BQ86SZ2 158 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 BPIFA4PQ86YQ2 179 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 HIST3H2BBQ8N257 126 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 SIGLECL1Q8N7X8 197 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 OR51A4Q8NGJ6 313 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 OR8D4Q8NGM9 314 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 OR4C6Q8NH72 309 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 PPTC7Q8NI37 304 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 SMCR5Q8TEV8 140 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 ARL11Q969Q4 196 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 TMEM203Q969S6 136 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 TMEM106AQ96A25 262 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 AP1S3Q96PC3 154 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 YPEL2Q96QA6 119 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 SCGB3A1Q96QR1 104 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 HIST1H2BLQ99880 126 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 MIEN1Q9BRT3 115 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 LXNQ9BS40 222 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 ADAT1Q9BUB4 502 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 ZNF471Q9BX82 626 aaPredicted RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 MRPL32Q9BYC8 188 aaKnown RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 TTTY12Q9BZ98 90 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 LINC00470Q9BZP3 86 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 TCEAL2Q9H3H9 227 aaPredicted RBP0.68□□□□□ -2.3
VPS35-207ENST00000568191 SMDT1Q9H4I9 107 aa0.68□□□□□ -2.3
VPS35-207ENST00000568191 OSTCQ9NRP0 149 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms