RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 VPS13DQ5THJ4 4388 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 DNAH10Q8IVF4 4471 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 LOC102723971A0A1B0GUV8 181 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 C9orf170A2RU37 121 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 CENPXA8MT69 81 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 FNDC10F2Z333 226 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 NDUFB6O95139 128 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 DEFB1P60022 68 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 SMIM8Q96KF7 97 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 PSENENQ9NZ42 101 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 HIGD1AQ9Y241 93 aa10.65□□□□□ -0.7
CLN3-222ENST00000566083 SMCO3A2RU48 225 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 F6UB75 175 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 HYPMO75409 117 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 PLP1P60201 277 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 LGALS9BQ3B8N2 356 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 CYP2G1PQ6ZSU1 146 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 C1orf158Q8N1D5 194 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 SHANK2-AS3Q9BTD1 123 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 SLC25A39Q9BZJ4 359 aaPredicted RBP10.64□□□□□ -0.71
CLN3-222ENST00000566083 SRRQ9GZT4 340 aa10.64□□□□□ -0.71
CLN3-222ENST00000566083 YTHDF2Q9Y5A9 579 aaKnown RBP10.64□□□□□ -0.71
CLN3-222ENST00000566083 H3BP45 60 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 GATA2P23769 480 aaPredicted RBP10.63□□□□□ -0.71
CLN3-222ENST00000566083 DAD1P61803 113 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 DLK1P80370 383 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 RNF212Q495C1 297 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 PXDC1Q5TGL8 231 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 UBE2DNLQ8IWF7 75 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 NPVFQ9HCQ7 196 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 DNAH6Q9C0G6 4158 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 HECTD4Q9Y4D8 3996 aa10.63□□□□□ -0.71
CLN3-222ENST00000566083 H3BRN7 92 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 ADAP1O75689 374 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 INSP01308 110 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 OR4E1P0C645 316 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 CNN1P51911 297 aaKnown RBP10.62□□□□□ -0.71
CLN3-222ENST00000566083 TAS2R30P59541 319 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 POLR2GP62487 172 aaKnown RBP eCLIP10.62□□□□□ -0.71
CLN3-222ENST00000566083 AMTNQ6UX39 209 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 OR10P1Q8NGE3 313 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 C20orf173Q96LM9 149 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 MGAT4CQ9UBM8 478 aa10.62□□□□□ -0.71
CLN3-222ENST00000566083 LYRM9A8MSI8 78 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 K7EPK0 472 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 OR5G3P0C626 314 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 LINC00869P0C866 280 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 TSPOP30536 169 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 FGL1Q08830 312 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 C4orf46Q504U0 113 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 TMEM182Q6ZP80 229 aaPredicted RBP10.61□□□□□ -0.71
CLN3-222ENST00000566083 TMEM256Q8N2U0 113 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 C15orf53Q8NAA6 179 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 OR11H7Q8NGC8 314 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 LRRC20Q8TCA0 184 aa10.61□□□□□ -0.71
CLN3-222ENST00000566083 SSSCA1O60232 199 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 TSC22D2O75157 780 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 FAM3BP58499 235 aaPredicted RBP10.6□□□□□ -0.71
CLN3-222ENST00000566083 SOHLH1Q5JUK2 328 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 TEPPQ6URK8 271 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 TMEM14EPQ6UXP3 125 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 GSG1LQ6UXU4 331 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 ZNF738Q8NE65 137 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 C17orf77Q96MU5 243 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 GGACTQ9BVM4 153 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 SCRT1Q9BWW7 348 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 PPP1R14DQ9NXH3 145 aa10.6□□□□□ -0.71
CLN3-222ENST00000566083 A0A087X0K7 114 aa10.59□□□□□ -0.71
CLN3-222ENST00000566083 PMS2P5A8MQ11 134 aa10.59□□□□□ -0.71
CLN3-222ENST00000566083 HTN3P15516 51 aa10.59□□□□□ -0.71
CLN3-222ENST00000566083 CXCL2P19875 107 aa10.59□□□□□ -0.71
CLN3-222ENST00000566083 PCLOQ9Y6V0 5065 aa10.59□□□□□ -0.71
CLN3-222ENST00000566083 TRAV8-2A0A0B4J237 113 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 BOLA2-SMG1P6H3BVE0 249 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 GOSR2O14653 212 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 CXCL3P19876 107 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 BAK1Q16611 211 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 SPINK13Q1W4C9 94 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 IAH1Q2TAA2 248 aaPredicted RBP10.58□□□□□ -0.72
CLN3-222ENST00000566083 ZNF546Q86UE3 836 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 PRSS29PA6NIE9 313 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 M0R2Z0 102 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 CRXO43186 299 aaPredicted RBP10.58□□□□□ -0.72
CLN3-222ENST00000566083 METTL15P1P0C7V9 234 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 ANXA7P20073 488 aaKnown RBP10.58□□□□□ -0.72
CLN3-222ENST00000566083 RHOBP62745 196 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 PSG3Q16557 428 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 LCN15Q6UWW0 184 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 RNF182Q8N6D2 247 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 OR8A1Q8NGG7 326 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 MITD1Q8WV92 249 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 ARL6Q9H0F7 186 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 ARV1Q9H2C2 271 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 FLVCR2Q9UPI3 526 aa10.58□□□□□ -0.72
CLN3-222ENST00000566083 M0R2N4 97 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 SCGB1D2O95969 90 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 TAS2R60P59551 318 aa10.57□□□□□ -0.72
CLN3-222ENST00000566083 RRAS2P62070 204 aaPredicted RBP10.57□□□□□ -0.72
CLN3-222ENST00000566083 HIST1H1AQ02539 215 aaPredicted RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms