RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 IGLL1P15814 213 aa15.59■□□□□ 0.09
CLN3-212ENST00000564574 SLC25A22Q9H936 323 aa15.59■□□□□ 0.09
CLN3-212ENST00000564574 RPRMQ9NS64 109 aa15.59■□□□□ 0.09
CLN3-212ENST00000564574 RPL7P18124 248 aaKnown RBP15.58■□□□□ 0.08
CLN3-212ENST00000564574 CDC34P49427 236 aaPredicted RBP15.58■□□□□ 0.08
CLN3-212ENST00000564574 RAB5CP51148 216 aa15.58■□□□□ 0.08
CLN3-212ENST00000564574 TAS2R45P59539 299 aa15.58■□□□□ 0.08
CLN3-212ENST00000564574 FAM90A2PQ658T7 463 aa15.58■□□□□ 0.08
CLN3-212ENST00000564574 FAM122CQ6P4D5 195 aa15.58■□□□□ 0.08
CLN3-212ENST00000564574 DPPA3Q6W0C5 159 aa15.58■□□□□ 0.08
CLN3-212ENST00000564574 SIGLEC15Q6ZMC9 328 aa15.58■□□□□ 0.08
CLN3-212ENST00000564574 TCF24Q7RTU0 167 aa15.58■□□□□ 0.08
CLN3-212ENST00000564574 RPP25LQ8N5L8 163 aaKnown RBP15.58■□□□□ 0.08
CLN3-212ENST00000564574 ACTR3CQ9C0K3 210 aaPredicted RBP15.58■□□□□ 0.08
CLN3-212ENST00000564574 TRRAPQ9Y4A5 3859 aa15.57■□□□□ 0.08
CLN3-212ENST00000564574 GALR1P47211 349 aa15.57■□□□□ 0.08
CLN3-212ENST00000564574 MORN5Q5VZ52 161 aa15.57■□□□□ 0.08
CLN3-212ENST00000564574 LEMD1Q68G75 181 aa15.57■□□□□ 0.08
CLN3-212ENST00000564574 RBPMS2Q6ZRY4 209 aaKnown RBP15.57■□□□□ 0.08
CLN3-212ENST00000564574 MIR17HGQ75NE6 70 aa15.57■□□□□ 0.08
CLN3-212ENST00000564574 BPIFA4PQ86YQ2 179 aa15.57■□□□□ 0.08
CLN3-212ENST00000564574 CD300EQ496F6 205 aaPredicted RBP15.56■□□□□ 0.08
CLN3-212ENST00000564574 KHDC3LQ587J8 217 aa15.56■□□□□ 0.08
CLN3-212ENST00000564574 SPATA31B1PQ5VZV4 182 aa15.56■□□□□ 0.08
CLN3-212ENST00000564574 LCN12Q6JVE5 192 aa15.56■□□□□ 0.08
CLN3-212ENST00000564574 STXBP6Q8NFX7 210 aa15.56■□□□□ 0.08
CLN3-212ENST00000564574 PLA2G2EQ9NZK7 142 aa15.56■□□□□ 0.08
CLN3-212ENST00000564574 TMEM14CQ9P0S9 112 aa15.56■□□□□ 0.08
CLN3-212ENST00000564574 TRAV5A0A0B4J249 113 aa15.55■□□□□ 0.08
CLN3-212ENST00000564574 CTXND1A0A1B0GTU2 59 aa15.55■□□□□ 0.08
CLN3-212ENST00000564574 TSPAN4O14817 238 aa15.55■□□□□ 0.08
CLN3-212ENST00000564574 SULT1A2P50226 295 aa15.55■□□□□ 0.08
CLN3-212ENST00000564574 SLC25A2Q9BXI2 301 aa15.55■□□□□ 0.08
CLN3-212ENST00000564574 CMYA5Q8N3K9 4069 aa15.54■□□□□ 0.08
CLN3-212ENST00000564574 MRPS12O15235 138 aaKnown RBP15.54■□□□□ 0.08
CLN3-212ENST00000564574 MEOX2P50222 304 aa15.54■□□□□ 0.08
CLN3-212ENST00000564574 PAFAH1B2P68402 229 aa15.54■□□□□ 0.08
CLN3-212ENST00000564574 TMEM61Q8N0U2 210 aa15.54■□□□□ 0.08
CLN3-212ENST00000564574 RAB24Q969Q5 203 aa15.54■□□□□ 0.08
CLN3-212ENST00000564574 FAM167A-AS1Q96KT0 104 aa15.54■□□□□ 0.08
CLN3-212ENST00000564574 TRAV2A0A0B4J234 112 aa15.53■□□□□ 0.08
CLN3-212ENST00000564574 STAG3L2P0CL84 134 aa15.53■□□□□ 0.08
CLN3-212ENST00000564574 STAG3L3P0CL85 134 aa15.53■□□□□ 0.08
CLN3-212ENST00000564574 ATF4P18848 351 aaPredicted RBP15.53■□□□□ 0.08
CLN3-212ENST00000564574 RPL11P62913 178 aaKnown RBP15.53■□□□□ 0.08
CLN3-212ENST00000564574 ALKAL2Q6UX46 152 aa15.53■□□□□ 0.08
CLN3-212ENST00000564574 PQLC2Q6ZP29 291 aa15.53■□□□□ 0.08
CLN3-212ENST00000564574 SPAG8Q99932 426 aaPredicted RBP15.53■□□□□ 0.08
CLN3-212ENST00000564574 ZMAT5Q9UDW3 170 aaKnown RBP15.53■□□□□ 0.08
CLN3-212ENST00000564574 VWFP04275 2813 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 A0A087X0K7 114 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 GP9P14770 177 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 SAMD13Q5VXD3 122 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 PAXXQ9BUH6 204 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 OR51M1Q9H341 326 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 NRN1Q9NPD7 142 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 SMAD5-AS1Q9Y6J3 95 aa15.52■□□□□ 0.08
CLN3-212ENST00000564574 ZNF785A8K8V0 405 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 OR7C2O60412 319 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 ZNF726P1Q15940 193 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 OXLD1Q5BKU9 147 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 SAMD5Q5TGI4 173 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 TEX261Q6UWH6 196 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 FAM213BQ8TBF2 198 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 RNF141Q8WVD5 230 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 MS4A6AQ9H2W1 248 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 SELENOKQ9Y6D0 94 aa15.51■□□□□ 0.07
CLN3-212ENST00000564574 IZUMO1RA6ND01 250 aa15.5■□□□□ 0.07
CLN3-212ENST00000564574 CXorf1O96002 111 aa15.5■□□□□ 0.07
CLN3-212ENST00000564574 IGLC2P0DOY2 106 aa15.5■□□□□ 0.07
CLN3-212ENST00000564574 HIST1H1EP10412 219 aaKnown RBP15.5■□□□□ 0.07
CLN3-212ENST00000564574 GUK1Q16774 197 aa15.5■□□□□ 0.07
CLN3-212ENST00000564574 MBD3L1Q8WWY6 194 aa15.5■□□□□ 0.07
CLN3-212ENST00000564574 HRH4Q9H3N8 390 aa15.5■□□□□ 0.07
CLN3-212ENST00000564574 OR4C46A6NHA9 309 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 DNASE2O00115 360 aaPredicted RBP15.49■□□□□ 0.07
CLN3-212ENST00000564574 IFNA7P01567 189 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 PYYP10082 97 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 FHITP49789 147 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 FAM74A1Q5RGS3 127 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 SSX7Q7RTT5 188 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 ZNF503Q96F45 646 aa15.49■□□□□ 0.07
CLN3-212ENST00000564574 IGKV3-7A0A075B6H7 116 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 MAP1LC3B2A6NCE7 125 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 HMGB3O15347 200 aaKnown RBP15.48■□□□□ 0.07
CLN3-212ENST00000564574 H2AFB1P0C5Y9 115 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 ARL14EPLP0DKL9 152 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 EGFEM1PQ0D2K5 195 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 GUCA2BQ16661 112 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 LCN15Q6UWW0 184 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 LRRC20Q8TCA0 184 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 DCANP1Q8TF63 244 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 MAP1LC3BQ9GZQ8 125 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 NOTCH3Q9UM47 2321 aa15.48■□□□□ 0.07
CLN3-212ENST00000564574 K7EQG2 157 aa15.47■□□□□ 0.07
CLN3-212ENST00000564574 ZNF253O75346 499 aa15.47■□□□□ 0.07
CLN3-212ENST00000564574 EIF3GO75821 320 aaKnown RBP eCLIP15.47■□□□□ 0.07
CLN3-212ENST00000564574 UBE2L3P68036 154 aaKnown RBP15.47■□□□□ 0.07
CLN3-212ENST00000564574 PDE6HQ13956 83 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms