RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 MRPL55Q7Z7F7 128 aaKnown RBP2.6□□□□□ -1.99
VPS35-203ENST00000562420 SLC22A18ASQ8N1D0 253 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 GAPTQ8N292 157 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 TMEM86BQ8N661 226 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 GVQW1Q8N7I0 195 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 OTOSQ8NHW6 89 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 NT5CQ8TCD5 201 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 SSC4DQ8WTU2 575 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 FGF13Q92913 245 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 ELSPBP1Q96BH3 223 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 PRELID3AQ96N28 172 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 LINC01587Q99440 93 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 MGST2Q99735 147 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 SLC25A2Q9BXI2 301 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 MRPL20Q9BYC9 149 aaKnown RBP2.6□□□□□ -1.99
VPS35-203ENST00000562420 FBXL15Q9H469 300 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 VSIRQ9H7M9 311 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 ZNF665Q9H7R5 613 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 KLHDC2Q9Y2U9 406 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 INSIG2Q9Y5U4 225 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 TMEM14AQ9Y6G1 99 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 PARP14Q460N5 1801 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 ABCA7Q8IZY2 2146 aa2.6□□□□□ -1.99
VPS35-203ENST00000562420 TRPM7Q96QT4 1865 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 IGHV3-16A0A0C4DH30 117 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 MDFIC2A0A1B0GVS7 189 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 A0A1B0GWB2 263 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 LOC107986453A0A1B0GWG9 222 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 FAM24AA6NFZ4 105 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 SRRM5B3KS81 715 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 C9JCJ5 164 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 K7EN84 100 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 CCL21O00585 134 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 NUPR1O60356 82 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 TRACP01848 142 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 MT-ATP8P03928 68 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 CECR9P0C854 216 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 PPP1CCP36873 323 aaKnown RBP2.59□□□□□ -1.99
VPS35-203ENST00000562420 RPL38P63173 70 aaKnown RBP2.59□□□□□ -1.99
VPS35-203ENST00000562420 RPL18AQ02543 176 aaKnown RBP2.59□□□□□ -1.99
VPS35-203ENST00000562420 ETDBQ3ZM63 59 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 MS4A13Q5J8X5 152 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 C1orf100Q5SVJ3 147 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 NOXRED1Q6NXP6 359 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 ATP5L2Q7Z4Y8 100 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 LHFPL1Q86WI0 220 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 C11orf53Q8IXP5 236 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 C10orf126Q8N4M7 172 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 MORN4Q8NDC4 146 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 OR2A1Q8NGT9 310 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 LMX1AQ8TE12 382 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 TSKUQ8WUA8 353 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 CT55Q8WUE5 264 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 H1FXQ92522 213 aaKnown RBP2.59□□□□□ -1.99
VPS35-203ENST00000562420 FAM3DQ96BQ1 224 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 DPH3Q96FX2 82 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 SLC25A44Q96H78 314 aaPredicted RBP2.59□□□□□ -1.99
VPS35-203ENST00000562420 C9orf85Q96MD7 179 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 APOOQ9BUR5 198 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 C19orf24Q9BVV8 132 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 RTL8AQ9BWD3 113 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 RETNQ9HD89 108 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 KCNIP2Q9NS61 270 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 STARD5Q9NSY2 213 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 TECRQ9NZ01 308 aaKnown RBP2.59□□□□□ -1.99
VPS35-203ENST00000562420 ZNF581Q9P0T4 197 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 GNG13Q9P2W3 67 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 CKLFQ9UBR5 152 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 ATG2AQ2TAZ0 1938 aa2.59□□□□□ -1.99
VPS35-203ENST00000562420 MYO10Q9HD67 2058 aa2.59□□□□□ -2
VPS35-203ENST00000562420 SBF1O95248 1867 aa2.58□□□□□ -2
VPS35-203ENST00000562420 MCM3APO60318 1980 aa2.58□□□□□ -2
VPS35-203ENST00000562420 CCDC88CQ9P219 2028 aa2.58□□□□□ -2
VPS35-203ENST00000562420 MYO18AQ92614 2054 aaKnown RBP2.58□□□□□ -2
VPS35-203ENST00000562420 IGKV6D-41A0A0C4DH26 115 aa2.58□□□□□ -2
VPS35-203ENST00000562420 SMIM28A0A1B0GU29 152 aa2.58□□□□□ -2
VPS35-203ENST00000562420 A6NIN4 97 aa2.58□□□□□ -2
VPS35-203ENST00000562420 CEBPZOSA8MTT3 80 aa2.58□□□□□ -2
VPS35-203ENST00000562420 CCDC179H3BU77 68 aa2.58□□□□□ -2
VPS35-203ENST00000562420 UPK2O00526 184 aa2.58□□□□□ -2
VPS35-203ENST00000562420 SDCBPO00560 298 aaPredicted RBP2.58□□□□□ -2
VPS35-203ENST00000562420 CDX4O14627 284 aaPredicted RBP2.58□□□□□ -2
VPS35-203ENST00000562420 FFAR1O14842 300 aa2.58□□□□□ -2
VPS35-203ENST00000562420 MRPS12O15235 138 aaKnown RBP2.58□□□□□ -2
VPS35-203ENST00000562420 BCE1O60756 84 aa2.58□□□□□ -2
VPS35-203ENST00000562420 NDUFB2O95178 105 aa2.58□□□□□ -2
VPS35-203ENST00000562420 PYYP10082 97 aa2.58□□□□□ -2
VPS35-203ENST00000562420 COX7CP15954 63 aa2.58□□□□□ -2
VPS35-203ENST00000562420 CSN1S1P47710 185 aa2.58□□□□□ -2
VPS35-203ENST00000562420 PSMB2P49721 201 aa2.58□□□□□ -2
VPS35-203ENST00000562420 RPL30P62888 115 aaKnown RBP2.58□□□□□ -2
VPS35-203ENST00000562420 HERVK_113P63121 156 aa2.58□□□□□ -2
VPS35-203ENST00000562420 HBG1P69891 147 aa2.58□□□□□ -2
VPS35-203ENST00000562420 HBG2P69892 147 aa2.58□□□□□ -2
VPS35-203ENST00000562420 CCL20P78556 96 aa2.58□□□□□ -2
VPS35-203ENST00000562420 WFDC2Q14508 124 aa2.58□□□□□ -2
VPS35-203ENST00000562420 C4orf26Q17RF5 130 aa2.58□□□□□ -2
VPS35-203ENST00000562420 SPRNQ5BIV9 151 aa2.58□□□□□ -2
VPS35-203ENST00000562420 MRPL2Q5T653 305 aaKnown RBP2.58□□□□□ -2
VPS35-203ENST00000562420 C9orf66Q5T8R8 295 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms