RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	ZNF414	Q96IQ9	312 aa		5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	OR4F4	Q96R69	305 aa		5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	TXNDC17	Q9BRA2	123 aa		5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	PAXX	Q9BUH6	204 aa		5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	NPFFR1	Q9GZQ6	430 aa		5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	ZNF702P	Q9H963	129 aa		5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	GAR1	Q9NY12	217 aa	Known RBP	5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	MRPL27	Q9P0M9	148 aa	Known RBP	5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	YTHDF2	Q9Y5A9	579 aa	Known RBP	5.82	□□□□□ -1.48
TPM1-231	ENST00000561395	DNAJC9-AS1	A6NH13	148 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	ADARB2-AS1	A8MUL3	147 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395		F6UZH7	168 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395		H3BRN7	92 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	NUPL2	O15504	423 aa	Known RBP	5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	PDE6D	O43924	150 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	SNAPIN	O95295	136 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	OR10J4	P0C629	311 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	PYY	P10082	97 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	GP9	P14770	177 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	ADM	P35318	185 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	ATP5G3	P48201	142 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	USF2	Q15853	346 aa	Predicted RBP	5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	C21orf62-AS1	Q17RA5	79 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	CST9LP1	Q5W188	147 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	CLEC19A	Q6UXS0	136 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	ZNF600	Q6ZNG1	722 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	STXBP6	Q8NFX7	210 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395		Q8WTZ3	238 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	USMG5	Q96IX5	58 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	DUX5	Q96PT3	197 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	SHANK2-AS3	Q9BTD1	123 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	NKX6-2	Q9C056	277 aa	Predicted RBP	5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	PRSS22	Q9GZN4	317 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	OR51M1	Q9H341	326 aa		5.81	□□□□□ -1.48
TPM1-231	ENST00000561395	GGTLC3	B5MD39	225 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	CLDN34	H7C241	214 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	TGOLN2	O43493	480 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	EIF4EBP3	O60516	100 aa	Predicted RBP	5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	IGHG4	P01861	327 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	CLEC3B	P05452	202 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	RNASE1	P07998	156 aa	Known RBP	5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	RPL15	P61313	204 aa	Known RBP	5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	KIAA0141	Q14154	515 aa	Predicted RBP	5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	LEMD1	Q68G75	181 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	S100A7A	Q86SG5	101 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395		Q8N2B8	174 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	CLRN3	Q8NCR9	226 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	C11orf52	Q96A22	123 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	FXYD5	Q96DB9	178 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	NIPSNAP3B	Q9BS92	247 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	KLK15	Q9H2R5	256 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	PARL	Q9H300	379 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	TMEM14C	Q9P0S9	112 aa		5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	PUS1	Q9Y606	427 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
TPM1-231	ENST00000561395	TENM3	Q9P273	2699 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	5.79	□□□□□ -1.48
TPM1-231	ENST00000561395		A0A0G2JLM5	398 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	SCO2	A0A1W2PP80	73 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395		A0A1W2PRE2	83 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395		H3BQ15	152 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	BMPR1B	O00238	502 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	PF4V1	P10720	104 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	NPPC	P23582	126 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	PSMB8	P28062	276 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	RAB9A	P51151	201 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	REL	Q04864	619 aa	Predicted RBP	5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	RHEB	Q15382	184 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	FAM74A3	Q4VXF1	159 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	ZNF343	Q6P1L6	599 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	TOMM20L	Q6UXN7	152 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	WFDC12	Q8WWY7	111 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	RPUSD4	Q96CM3	377 aa	Known RBP	5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	TVP23C	Q96ET8	276 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	SMIM7	Q9BQ49	75 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	GNB4	Q9HAV0	340 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	RABAC1	Q9UI14	185 aa		5.79	□□□□□ -1.48
TPM1-231	ENST00000561395	IGHV3-35	A0A0C4DH35	117 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	ZNF98	A6NK75	572 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	ZNF727	A8MUV8	499 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	PPP5D1	E7EU14	171 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395		M0R036	132 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	MRPS12	O15235	138 aa	Known RBP	5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	TRBV12-3	P01733	135 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	NBEAP1	P0C6P0	100 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	ARL3	P36405	182 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	SLC35B1	P78383	322 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	FOXE3	Q13461	319 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	ZNF674	Q2M3X9	581 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	LCNL1	Q6ZST4	164 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	ZNF329	Q86UD4	541 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	BPIFA4P	Q86YQ2	179 aa		5.78	□□□□□ -1.48
TPM1-231	ENST00000561395	CLPSL1	A2RUU4	121 aa		5.77	□□□□□ -1.49
TPM1-231	ENST00000561395	DNASE2	O00115	360 aa	Predicted RBP	5.77	□□□□□ -1.49
TPM1-231	ENST00000561395	NDUFB4	O95168	129 aa		5.77	□□□□□ -1.49
TPM1-231	ENST00000561395	IGHV3-11	P01762	117 aa		5.77	□□□□□ -1.49
TPM1-231	ENST00000561395	ELANE	P08246	267 aa		5.77	□□□□□ -1.49
TPM1-231	ENST00000561395	IGLC2	P0DOY2	106 aa		5.77	□□□□□ -1.49
TPM1-231	ENST00000561395	HIST1H1E	P10412	219 aa	Known RBP	5.77	□□□□□ -1.49
TPM1-231	ENST00000561395	S100A7	P31151	101 aa		5.77	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms