RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DLK1P80370 383 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 ZNF90Q03938 601 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 RAB31Q13636 194 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 PXDC1Q5TGL8 231 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 OR8G2PQ6IF36 304 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 TCF24Q7RTU0 167 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 SBSPONQ8IVN8 264 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 DEFB125Q8N687 156 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 PBDC1Q9BVG4 233 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 SMDT1Q9H4I9 107 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 TMEM231Q9H6L2 316 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 U3KQE9 123 aa6.99□□□□□ -1.29
LDLR-211ENST00000560173 EPPK1P58107 5090 aaKnown RBP6.99□□□□□ -1.29
LDLR-211ENST00000560173 A0A1W2PS18 150 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 FABP1P07148 127 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 AKR1C1Q04828 323 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 VWC2Q2TAL6 325 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 ODF3L2Q3SX64 289 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 LINC00322Q6ZN03 302 aaPredicted RBP6.98□□□□□ -1.29
LDLR-211ENST00000560173 Q6ZRG5 221 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 OR51G1Q8NGK1 321 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 LYPD6BQ8NI32 183 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 RNF125Q96EQ8 232 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 NARS2Q96I59 477 aaKnown RBP6.98□□□□□ -1.29
LDLR-211ENST00000560173 WDR61Q9GZS3 305 aaKnown RBP6.98□□□□□ -1.29
LDLR-211ENST00000560173 TUBA4BQ9H853 241 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 SRD5A3Q9H8P0 318 aa6.98□□□□□ -1.29
LDLR-211ENST00000560173 IGKV3-7A0A075B6H7 116 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 SMCO3A2RU48 225 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 TFPI2P48307 235 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 ARL16Q0P5N6 197 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 C16orf54Q6UWD8 224 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 TMEM182Q6ZP80 229 aaPredicted RBP6.97□□□□□ -1.29
LDLR-211ENST00000560173 TMEM144Q7Z5S9 345 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 PCNPQ8WW12 178 aaKnown RBP6.97□□□□□ -1.29
LDLR-211ENST00000560173 GLMPQ8WWB7 406 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 GRAMD2BQ96HH9 432 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 FAM110AQ9BQ89 295 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 MS4A6AQ9H2W1 248 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 RABAC1Q9UI14 185 aa6.97□□□□□ -1.29
LDLR-211ENST00000560173 TRAV2A0A0B4J234 112 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 TRAV1-1A0A0B4J248 108 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 UBE2L5PA0A1B0GUS4 154 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 RBMY1BA6NDE4 496 aaKnown RBP6.96□□□□□ -1.3
LDLR-211ENST00000560173 RBMY1EA6NEQ0 496 aaKnown RBP6.96□□□□□ -1.3
LDLR-211ENST00000560173 BUB3O43684 328 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 H2AFB1P0C5Y9 115 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 RBMY1DP0C7P1 496 aaKnown RBP6.96□□□□□ -1.3
LDLR-211ENST00000560173 TAGLN2P37802 199 aaKnown RBP6.96□□□□□ -1.3
LDLR-211ENST00000560173 LYZP61626 148 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 PAFAH1B2P68402 229 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 PEA15Q15121 130 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 HAGHQ16775 308 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 TMEM41BQ5BJD5 291 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 TOR2AQ5JU69 321 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 CCDC28AQ8IWP9 274 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 GBGT1Q8N5D6 347 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 STPG3Q8N7X2 389 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 FAM213BQ8TBF2 198 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 TM2D3Q9BRN9 247 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 KRTAP17-1Q9BYP8 105 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 HRH4Q9H3N8 390 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 NPVFQ9HCQ7 196 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 BIRC6Q9NR09 4857 aa6.96□□□□□ -1.3
LDLR-211ENST00000560173 DNAH7Q8WXX0 4024 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 HELTA6NFD8 242 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 FGF7P21781 194 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 GATA2P23769 480 aaPredicted RBP6.95□□□□□ -1.3
LDLR-211ENST00000560173 RPL11P62913 178 aaKnown RBP6.95□□□□□ -1.3
LDLR-211ENST00000560173 ACOT6Q3I5F7 207 aaPredicted RBP6.95□□□□□ -1.3
LDLR-211ENST00000560173 CYP2G1PQ6ZSU1 146 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 BPIFCQ8NFQ6 507 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 STXBP6Q8NFX7 210 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 SH3BGRL3Q9H299 93 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 MAP6D1Q9H9H5 199 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 SLC45A2Q9UMX9 530 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 WDR83OSQ9Y284 106 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 U3KQK5 164 aa6.95□□□□□ -1.3
LDLR-211ENST00000560173 K7EQG2 157 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 DNASE2O00115 360 aaPredicted RBP6.94□□□□□ -1.3
LDLR-211ENST00000560173 IFNA1P01562 189 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 PPT1P50897 306 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 CMC4P56277 68 aaPredicted RBP6.94□□□□□ -1.3
LDLR-211ENST00000560173 SELENOTP62341 195 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 TEPPQ6URK8 271 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 WFDC3Q8IUB2 231 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 FAM24BQ8N5W8 94 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 GGTLC1Q9BX51 225 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 NPCDR1Q9BY65 106 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 ACTR3CQ9C0K3 210 aaPredicted RBP6.94□□□□□ -1.3
LDLR-211ENST00000560173 TREM1Q9NP99 234 aa6.94□□□□□ -1.3
LDLR-211ENST00000560173 LOC102724200A0A096LPH7 203 aaPredicted RBP6.93□□□□□ -1.3
LDLR-211ENST00000560173 NDUFS6O75380 124 aaKnown RBP6.93□□□□□ -1.3
LDLR-211ENST00000560173 LINC00869P0C866 280 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 M6PRP20645 277 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 PLP1P60201 277 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 PMS2P11Q13670 270 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 ZNF124Q15973 351 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 C1orf194Q5T5A4 169 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 SIGLEC15Q6ZMC9 328 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms