RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 EPDR1Q9UM22 224 aa9.81□□□□□ -0.84
USP3-213ENST00000559711 ZNF469Q96JG9 3925 aaPredicted RBP9.81□□□□□ -0.84
USP3-213ENST00000559711 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.8□□□□□ -0.84
USP3-213ENST00000559711 IGHV3-35A0A0C4DH35 117 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 A0A0G2JLM5 398 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 PEX7O00628 323 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 PF4V1P10720 104 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 CD99P14209 185 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 RAB9AP51151 201 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 TAS2R60P59551 318 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 LYPD1Q8N2G4 141 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 FAM24BQ8N5W8 94 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 SIGLECL1Q8N7X8 197 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 ANAPC16Q96DE5 110 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 NPFFR1Q9GZQ6 430 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 Q9H3A6 140 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 GNB4Q9HAV0 340 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 OTORQ9NRC9 128 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 CLPSL1A2RUU4 121 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 PGPEP1LA6NFU8 196 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 RPL7P18124 248 aaKnown RBP9.8□□□□□ -0.84
USP3-213ENST00000559711 PSMB8P28062 276 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 PDE6HQ13956 83 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 TMEM95Q3KNT9 176 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 C5orf17Q8NAS9 161 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 ZNF702PQ9H963 129 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 CDC42EP3Q9UKI2 254 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 KLF12Q9Y4X4 402 aa9.8□□□□□ -0.84
USP3-213ENST00000559711 TLN2Q9Y4G6 2542 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 PPP5D1E7EU14 171 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 H3BTX0 84 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 SLC25A5P05141 298 aaKnown RBP9.79□□□□□ -0.84
USP3-213ENST00000559711 GNG4P50150 75 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 ELOBQ15370 118 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 CENPWQ5EE01 88 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 IL17RELQ6ZVW7 336 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 Q8N2B8 174 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 IGF2BP2-AS1Q96M15 143 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 AURKAIP1Q9NWT8 199 aaPredicted RBP9.79□□□□□ -0.84
USP3-213ENST00000559711 AKAP9Q99996 3911 aa9.79□□□□□ -0.84
USP3-213ENST00000559711 H7BYZ3 331 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 K7EN84 100 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 BUB3O43684 328 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 FOLR2P14207 255 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 ARL3P36405 182 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 SRP14P37108 136 aaKnown RBP9.78□□□□□ -0.84
USP3-213ENST00000559711 CNN1P51911 297 aaKnown RBP9.78□□□□□ -0.84
USP3-213ENST00000559711 SIGLEC15Q6ZMC9 328 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 LINC00479Q96M42 142 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 C17orf77Q96MU5 243 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 ATG101Q9BSB4 218 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 U3KQE9 123 aa9.78□□□□□ -0.84
USP3-213ENST00000559711 PPP1R2P9O14990 202 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 IGLV2-8P01709 118 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 TRBV12-3P01733 135 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 CRYBA1P05813 215 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 S100A9P06702 114 aaKnown RBP9.77□□□□□ -0.84
USP3-213ENST00000559711 RAB5AP20339 215 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 GNG5P63218 68 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 TMEM183BQ1AE95 376 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 C1orf194Q5T5A4 169 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 OR8I2Q8N0Y5 310 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 OR4X2Q8NGF9 303 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 SFRP2Q96HF1 295 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 SMAD5-AS1Q9Y6J3 95 aa9.77□□□□□ -0.84
USP3-213ENST00000559711 IGHV3OR16-8A0A075B7F1 116 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 NDUFA4O00483 81 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 TCRAP04437 139 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 PFN1P07737 140 aaKnown RBP9.77□□□□□ -0.85
USP3-213ENST00000559711 RPL15P61313 204 aaKnown RBP9.77□□□□□ -0.85
USP3-213ENST00000559711 FAM209BQ5JX69 171 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 TEX38Q6PEX7 206 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 LCNL1Q6ZST4 164 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 GPR82Q96P67 336 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 METTL26Q96S19 204 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 YAE1D1Q9NRH1 226 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 URGCP-MRPS24S4R325 110 aa9.77□□□□□ -0.85
USP3-213ENST00000559711 TRBV24-1A0A075B6N3 115 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 SLC17A3O00476 420 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 ISLRO14498 428 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 ZNF253O75346 499 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 GCGP01275 180 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 IGHV3-11P01762 117 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 ELANEP08246 267 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 ATF4P18848 351 aaPredicted RBP9.76□□□□□ -0.85
USP3-213ENST00000559711 SLC35B1P78383 322 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 EXOC3-AS1Q8N2X6 119 aa9.76□□□□□ -0.85
USP3-213ENST00000559711 A0A087X0K7 114 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 TRAV34A0A0B4J273 112 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 CXCL1P09341 107 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 HNF1AP20823 631 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 GALR1P47211 349 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 FOXE3Q13461 319 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 C10orf99Q6UWK7 81 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 BAGE2Q86Y30 109 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 ARL6IP6Q8N6S5 226 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 RNF152Q8N8N0 203 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 OR10G8Q8NGN5 311 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 CMTM2Q8TAZ6 248 aa9.75□□□□□ -0.85
USP3-213ENST00000559711 MYOZ3Q8TDC0 251 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms