RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 DOLPP1Q86YN1 238 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 BOD1L2Q8IYS8 172 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 LINC01561Q8N1V8 128 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 LRRC25Q8N386 305 aaPredicted RBP1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TTC9CQ8N5M4 171 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 NKAPP1Q8N9T2 125 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR51T1Q8NGJ9 327 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR1L4Q8NGR5 311 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR10X1Q8NGY0 326 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR52E5Q8NH55 327 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR2AE1Q8NHA4 323 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TSKUQ8WUA8 353 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 LSM10Q969L4 123 aaKnown RBP1.93□□□□□ -2.1
VPS13C-208ENST00000559119 GALMQ96C23 342 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 ARHGAP5-AS1Q96IT6 56 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 AP1S3Q96PC3 154 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR2A5Q96R48 311 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM70Q9BUB7 260 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM59Q9BXS4 323 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 PECRQ9BY49 303 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 AICDAQ9GZX7 198 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM191AQ9H0A3 160 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM222Q9H0R3 208 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 RAB1BQ9H0U4 201 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OR2D2Q9H210 308 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM133Q9H2Q1 129 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF286AQ9HBT8 521 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 MED29Q9NX70 200 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 RABAC1Q9UI14 185 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 ANXA10Q9UJ72 324 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 PSG8Q9UQ74 426 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 CYSLTR1Q9Y271 337 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF257Q9Y2Q1 563 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 ARL2-SNX15V9GYD0 113 aa1.93□□□□□ -2.1
VPS13C-208ENST00000559119 OTOGLQ3ZCN5 2332 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 NLRC5Q86WI3 1866 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 NUP210Q8TEM1 1887 aaPredicted RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 MYO16Q9Y6X6 1858 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CASP8AP2Q9UKL3 1982 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 BPTFQ12830 3046 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PTPRDP23468 1912 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 DENND4CQ5VZ89 1909 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PLXNB3Q9ULL4 1909 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CCDC88CQ9P219 2028 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 IGKV1D-42A0A075B6H8 117 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TRGV10A0A0A0MS01 117 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1B0GWB2 263 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1W2PPM0 123 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1W2PPV4 95 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 A0A1W2PPV9 198 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM213A2RRL7 107 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PRSS37A4D1T9 235 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 SLC22A20A6NK97 555 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF878C9JN71 531 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 K7EQS6 105 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PLPP3O14495 311 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 HMGB3O15347 200 aaKnown RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CHST1O43916 411 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OR2J3O76001 311 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 BRI3O95415 125 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM50AO95807 157 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TTRP02766 147 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CT45A6P0DMU7 189 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CT45A5P0DMU8 189 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CT45A7P0DMV0 189 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 COX8AP10176 69 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CPMP14384 443 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 USF1P22415 310 aaPredicted RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OMGP23515 440 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 NPPCP23582 126 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 BLVRBP30043 206 aaPredicted RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 NMUP48645 174 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TCL1AP56279 114 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PSG4Q00888 419 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 RPEL1Q2QD12 228 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TIGITQ495A1 244 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CT45A1Q5HYN5 189 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 DMRTC1Q5HYR2 192 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TIMM23BQ5SRD1 257 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PLCXD3Q63HM9 321 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 EBLN2Q6P2I7 272 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 TMEM136Q6ZRR5 245 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 SPATA12Q7Z6I5 190 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OR5AS1Q8N127 324 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 RPP25LQ8N5L8 163 aaKnown RBP1.92□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF645Q8N7E2 425 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 GATSQ8NAP1 163 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OR2M3Q8NG83 312 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OR4X2Q8NGF9 303 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OR9G4Q8NGQ1 327 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OR10AG1Q8NH19 301 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 OR4A5Q8NH83 315 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 ATP6V0E2Q8NHE4 81 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 CT45A3Q8NHU0 189 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 ZNF502Q8TBZ5 544 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 NT5CQ8TCD5 201 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 BLNKQ8WV28 456 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 PP6455Q8WZ26 134 aa1.92□□□□□ -2.1
VPS13C-208ENST00000559119 ST8SIA1Q92185 356 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms