RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 OSTCQ9NRP0 149 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 SOX21Q9Y651 276 aaPredicted RBP8.35□□□□□ -1.07
CUX1-217ENST00000558836 IGHV7-81A0A0B4J1V7 117 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 YPEL3P61236 119 aaPredicted RBP8.35□□□□□ -1.07
CUX1-217ENST00000558836 BRD3OSQ6XYD6 125 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 TMEM219Q86XT9 240 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 EGR2P11161 476 aaPredicted RBP8.34□□□□□ -1.07
CUX1-217ENST00000558836 TAS2R60P59551 318 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 RNF125Q96EQ8 232 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 C14orf144Q96I85 54 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 MRPL27Q9P0M9 148 aaKnown RBP8.34□□□□□ -1.07
CUX1-217ENST00000558836 LINC00527Q9UJ94 153 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 TP53TG3Q9ULZ0 132 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 NBPF19A0A087WUL8 3843 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 F8W735 103 aaPredicted RBP8.34□□□□□ -1.07
CUX1-217ENST00000558836 G3V318 75 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 PDLIM4P50479 330 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 PLP1P60201 277 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 COA6Q5JTJ3 125 aaKnown RBP8.34□□□□□ -1.07
CUX1-217ENST00000558836 GOLT1AQ6ZVE7 132 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 Q8N6K4 173 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 Q8N9W7 124 aa8.34□□□□□ -1.07
CUX1-217ENST00000558836 IGLV11-55A0A075B6I3 123 aa8.34□□□□□ -1.08
CUX1-217ENST00000558836 M0R3E3 92 aa8.34□□□□□ -1.08
CUX1-217ENST00000558836 TCRAP04437 139 aa8.34□□□□□ -1.08
CUX1-217ENST00000558836 GZMBP10144 247 aa8.34□□□□□ -1.08
CUX1-217ENST00000558836 TMEM183BQ1AE95 376 aa8.34□□□□□ -1.08
CUX1-217ENST00000558836 CIARTQ8N365 385 aaPredicted RBP8.34□□□□□ -1.08
CUX1-217ENST00000558836 PRDM13Q9H4Q3 707 aa8.34□□□□□ -1.08
CUX1-217ENST00000558836 DOPEY2Q9Y3R5 2298 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 IGHV4-61A0A0C4DH41 118 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 FAM106CPP0CH98 169 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 CRISP2P16562 243 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 CAMPP49913 170 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 UBE2E1P51965 193 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 TCF24Q7RTU0 167 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 PRNTQ86SH4 94 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 MS4A10Q96PG2 267 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 ATG101Q9BSB4 218 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 CENPVL3A0A0U1RRI6 287 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 VWC2LB2RUY7 222 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 MINOS1Q5TGZ0 78 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 IGFL4Q6B9Z1 124 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 GBGT1Q8N5D6 347 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 CHRDL1Q9BU40 450 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 SSBP4Q9BWG4 385 aaPredicted RBP8.33□□□□□ -1.08
CUX1-217ENST00000558836 C21orf62Q9NYP8 219 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 MINOS1-NBL1R4GNA1 71 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 TLN2Q9Y4G6 2542 aa8.33□□□□□ -1.08
CUX1-217ENST00000558836 SMIM27A0A1W2PRY6 76 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 HSBP1L1C9JCN9 74 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 OVOL3O00110 214 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 AMY1AP04745 511 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 LINC00310P59036 64 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 BAGE3Q86Y29 109 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 C5orf17Q8NAS9 161 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 NUP35Q8NFH5 326 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 CMTM2Q8TAZ6 248 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 GPR82Q96P67 336 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 CCL19Q99731 98 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 FBXL7Q9UJT9 491 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 HIGD1CA8MV81 97 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 ATP6V0E1O15342 81 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 SERF1AO75920 110 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 HIST1H1EP10412 219 aaKnown RBP8.32□□□□□ -1.08
CUX1-217ENST00000558836 MFAP4P55083 255 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 UNQ5815/PRO19632Q6UWF5 114 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 TMEM136Q6ZRR5 245 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 TTC9CQ8N5M4 171 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 TMEM18Q96B42 140 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 NEU1Q99519 415 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 SRSF8Q9BRL6 282 aaKnown RBP8.32□□□□□ -1.08
CUX1-217ENST00000558836 SHANK2-AS3Q9BTD1 123 aa8.32□□□□□ -1.08
CUX1-217ENST00000558836 IGHV3OR16-13A0A075B7E8 117 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 IGHV3-74A0A0B4J1X5 117 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 TOMM40O96008 361 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 SLAQ13239 276 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 BPIFA4PQ86YQ2 179 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 CLUHP3Q96NS8 147 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 C7orf69Q9H7B7 122 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 NPIPB5A8MRT5 1133 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 NPFFO15130 113 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 EBI3Q14213 229 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 GDF5OSQ5U4N7 250 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 RNF24Q9Y225 148 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 TRBV19A0A075B6N1 114 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 IGHV3-66A0A0C4DH42 116 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 H3BRN7 92 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 CTSGP08311 255 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 GPR183P32249 361 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 JOSD1Q15040 202 aaPredicted RBP8.31□□□□□ -1.08
CUX1-217ENST00000558836 C15orf32Q32M92 178 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 GNB1LQ9BYB4 327 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 GNB4Q9HAV0 340 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 MXRA5Q9NR99 2828 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 KLF12Q9Y4X4 402 aa8.31□□□□□ -1.08
CUX1-217ENST00000558836 ZNF469Q96JG9 3925 aaPredicted RBP8.3□□□□□ -1.08
CUX1-217ENST00000558836 TRAV40A0A0B4J280 105 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 HLA-DRB1P01911 266 aa8.3□□□□□ -1.08
CUX1-217ENST00000558836 SRIP30626 198 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms