RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 C2orf50Q96LR7 162 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 C20orf27Q9GZN8 174 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 ARL5AQ9Y689 179 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 DOCK5Q9H7D0 1870 aa-0.58□□□□□ -2.5
VPS13C-205ENST00000558088 ARHGEF11O15085 1522 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 SIP14410 1827 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 RIMBP3CA6NJZ7 1639 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 RIMBP3BA6NNM3 1639 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 AHCTF1Q8WYP5 2266 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 RIMBP3Q9UFD9 1639 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 A0A0A6YYH2 397 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 FAM236DA0A1B0GTK5 79 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 A6NJ64 397 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 OR10J4P0C629 311 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 FAM236CP0DP71 79 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 PPIBP23284 216 aaKnown RBP-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 MED21Q13503 144 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 ACOT6Q3I5F7 207 aaPredicted RBP-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 BCL2L15Q5TBC7 163 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 CD200R1LQ6Q8B3 271 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 FAM151BQ6UXP7 276 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 TMEM86BQ8N661 226 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 C5orf17Q8NAS9 161 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 POP5Q969H6 163 aaKnown RBP-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 MALSU1Q96EH3 234 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 TVP23BQ9NYZ1 205 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 USE1Q9NZ43 259 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 MUC2Q02817 5179 aa-0.59□□□□□ -2.5
VPS13C-205ENST00000558088 ZANQ9Y493 2812 aa-0.6□□□□□ -2.5
VPS13C-205ENST00000558088 PTPRFP10586 1907 aa-0.6□□□□□ -2.5
VPS13C-205ENST00000558088 HECW1Q76N89 1606 aa-0.6□□□□□ -2.5
VPS13C-205ENST00000558088 BCORL1Q5H9F3 1711 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 WRNQ14191 1432 aaPredicted RBP eCLIP-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 A0A1W2PRS3 328 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 TGOLN2O43493 480 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 OR7C1O76099 320 aaPredicted RBP-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 CFDP00746 253 aaPredicted RBP-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 SRIP30626 198 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 RAB5CP51148 216 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 VBP1P61758 197 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 GLYATL3Q5SZD4 288 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 CT55Q8WUE5 264 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 CHCHD1Q96BP2 118 aaKnown RBP-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 C8orf76Q96K31 380 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 ZNF714Q96N38 554 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 YPEL2Q96QA6 119 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 CMSS1Q9BQ75 279 aaKnown RBP-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 CCDC94Q9BW85 323 aaPredicted RBP-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 NPCDR1Q9BY65 106 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 UQCC1Q9NVA1 299 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 MRPL27Q9P0M9 148 aaKnown RBP-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 NUP155O75694 1391 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 KDM6BO15054 1643 aa-0.6□□□□□ -2.51
VPS13C-205ENST00000558088 MGAMO43451 1857 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 SBF1O95248 1867 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 CACNA1AO00555 2505 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 CACNA1HO95180 2353 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 C9orf170A2RU37 121 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 RNASE4P34096 147 aaKnown RBP-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 RPL37P61927 97 aaKnown RBP-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 COX6A2Q02221 97 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 HIST3H3Q16695 136 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 CCDC122Q5T0U0 273 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 C22orf39Q6P5X5 142 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 Q6Q795 121 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 PATE2Q6UY27 113 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 LRRC18Q8N456 261 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 OR5D16Q8NGK9 328 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 POPDC3Q9HBV1 291 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 F8P00451 2351 aa-0.61□□□□□ -2.51
VPS13C-205ENST00000558088 TRAV27A0A087WT01 109 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 FAM159BA6NKW6 160 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 CNIH1O95406 144 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 C8GP07360 202 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 RPS3P23396 243 aaKnown RBP eCLIP-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 SULT1A1P50225 295 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 AESQ08117 197 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 ARPINQ7Z6K5 226 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 OR6V1Q8N148 313 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 C10orf111Q8N326 155 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 LINC00208Q96KT6 92 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 ATP6V1G3Q96LB4 118 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 TMEM126AQ9H061 195 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 ENY2Q9NPA8 101 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 RTL1A6NKG5 1358 aa-0.62□□□□□ -2.51
VPS13C-205ENST00000558088 CREBBPQ92793 2442 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 KPNA3O00505 521 aaPredicted RBP-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 HAND1O96004 215 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 TTRP02766 147 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 RANP62826 216 aaKnown RBP-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 MIR22HGQ0VDD5 57 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 IMPG1Q17R60 797 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 TMEM14EPQ6UXP3 125 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 IDO2Q6ZQW0 420 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 LINC00299Q6ZSB3 139 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 HYLS1Q96M11 299 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 RNASE7Q9H1E1 156 aaKnown RBP-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 TMEM133Q9H2Q1 129 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 VPS29Q9UBQ0 182 aa-0.63□□□□□ -2.51
VPS13C-205ENST00000558088 ROBO3Q96MS0 1386 aa-0.63□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms