RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 ZNF546Q86UE3 836 aa9.4□□□□□ -0.9
TMEM260-215ENST00000557626 NOXA1Q86UR1 476 aa9.4□□□□□ -0.9
TMEM260-215ENST00000557626 TMEM116Q8NCL8 245 aa9.4□□□□□ -0.9
TMEM260-215ENST00000557626 OR4X1Q8NH49 305 aa9.4□□□□□ -0.9
TMEM260-215ENST00000557626 NPIPB3Q92617 1050 aa9.4□□□□□ -0.9
TMEM260-215ENST00000557626 C21orf62Q9NYP8 219 aa9.4□□□□□ -0.9
TMEM260-215ENST00000557626 HSPB11Q9Y547 144 aa9.4□□□□□ -0.9
TMEM260-215ENST00000557626 HMSDA8MTL9 139 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 TSPAN4O14817 238 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 CLEC3BP05452 202 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 RPP30P78346 268 aaKnown RBP9.39□□□□□ -0.91
TMEM260-215ENST00000557626 SLC38A11Q08AI6 406 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 ZNF124Q15973 351 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 FAM106AQ4KMX7 169 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 FAM209BQ5JX69 171 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 LAMTOR1Q6IAA8 161 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 OR10P1Q8NGE3 313 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 CXorf58Q96LI9 332 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 THYN1Q9P016 225 aa9.39□□□□□ -0.91
TMEM260-215ENST00000557626 TRBV7-1A0A0A6YYK4 115 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 OR4C46A6NHA9 309 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 ARPC5O15511 151 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 CLN5O75503 358 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 IGLC1P0CG04 106 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 BTF3P20290 206 aaKnown RBP9.38□□□□□ -0.91
TMEM260-215ENST00000557626 GPR183P32249 361 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 MFAP4P55083 255 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 ICAM4Q14773 271 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 LGALSLQ3ZCW2 172 aaPredicted RBP9.38□□□□□ -0.91
TMEM260-215ENST00000557626 TMEM182Q6ZP80 229 aaPredicted RBP9.38□□□□□ -0.91
TMEM260-215ENST00000557626 THAP8Q8NA92 274 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 C15orf53Q8NAA6 179 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 OR5C1Q8NGR4 320 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 MARC2Q969Z3 335 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 EEF1AKMT3Q96AZ1 226 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 FAM210BQ96KR6 192 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 SLC25A31Q9H0C2 315 aa9.38□□□□□ -0.91
TMEM260-215ENST00000557626 RPS10-NUDT3A0A1W2PQS6 291 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 OR2T8A6NH00 312 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 FNDC10F2Z333 226 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 NKX2-5P52952 324 aaPredicted RBP9.37□□□□□ -0.91
TMEM260-215ENST00000557626 BAXQ07812 192 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 ACY3Q96HD9 319 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 ATP6V0BQ99437 205 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 TXN2Q99757 166 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 GGACTQ9BVM4 153 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 SMIM3Q9BZL3 60 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 CYTL1Q9NRR1 136 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 WDR83OSQ9Y284 106 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 RFNGQ9Y644 331 aa9.37□□□□□ -0.91
TMEM260-215ENST00000557626 CYB5BO43169 146 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 C8orf88P0DMB2 117 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 S100A11P31949 105 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 EIF2B2P49770 351 aaKnown RBP9.36□□□□□ -0.91
TMEM260-215ENST00000557626 CLINT1Q14677 625 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 TIGITQ495A1 244 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 ETFRF1Q6IPR1 90 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 TMEM144Q7Z5S9 345 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 STX12Q86Y82 276 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 C9orf62Q8N4C0 152 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 KCNRGQ8N5I3 272 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 OR1S2Q8NGQ3 325 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 TMEM147Q9BVK8 224 aa9.36□□□□□ -0.91
TMEM260-215ENST00000557626 MRPL27Q9P0M9 148 aaKnown RBP9.36□□□□□ -0.91
TMEM260-215ENST00000557626 IGHV3-35A0A0C4DH35 117 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 BOLA2-SMG1P6H3BVE0 249 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 ARL3P36405 182 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 AP2S1P53680 142 aaPredicted RBP9.35□□□□□ -0.91
TMEM260-215ENST00000557626 ZNF90Q03938 601 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 Q56UQ5 140 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 UNQ9165/PRO28630Q6UXU0 137 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 UBAC2Q8NBM4 344 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 DEFB104AQ8WTQ1 72 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 SLC35E1Q96K37 410 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 MGST2Q99735 147 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 ATG101Q9BSB4 218 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 UQCC1Q9NVA1 299 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 PGPEP1Q9NXJ5 209 aa9.35□□□□□ -0.91
TMEM260-215ENST00000557626 GNG7O60262 68 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 LINC00869P0C866 280 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 GATA2P23769 480 aaPredicted RBP9.34□□□□□ -0.91
TMEM260-215ENST00000557626 OR10J1P30954 320 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 FUSP35637 526 aaKnown RBP eCLIP9.34□□□□□ -0.91
TMEM260-215ENST00000557626 NPBWR1P48145 328 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 HBG1P69891 147 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 HBG2P69892 147 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 OR2F1Q13607 317 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 ZNF345Q14585 488 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 ATP6V1FQ16864 119 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 ZFP69Q49AA0 526 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 HYLS1Q96M11 299 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 TRGV9Q99603 122 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 ATP5SQ99766 215 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 NPVFQ9HCQ7 196 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 SLC45A2Q9UMX9 530 aa9.34□□□□□ -0.91
TMEM260-215ENST00000557626 UBE2L5PA0A1B0GUS4 154 aa9.33□□□□□ -0.92
TMEM260-215ENST00000557626 SMCO3A2RU48 225 aa9.33□□□□□ -0.92
TMEM260-215ENST00000557626 PFDN1O60925 122 aa9.33□□□□□ -0.92
TMEM260-215ENST00000557626 YPEL3P61236 119 aaPredicted RBP9.33□□□□□ -0.92
TMEM260-215ENST00000557626 HAMPP81172 84 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms