RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 IGHV4-4A0A075B6R2 117 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 TRAV3A0A0B4J244 114 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 A0A0G2JRQ6 117 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 C15orf61A6NNL5 157 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 F8W735 103 aaPredicted RBP5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 NXPH3O95157 252 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 CA1P00915 261 aaPredicted RBP5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 METTL15P1P0C7V9 234 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 ADMP35318 185 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 TAGLN2P37802 199 aaKnown RBP5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 SNCAP37840 140 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 TFPI2P48307 235 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 PAX9P55771 341 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 PEA15Q15121 130 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 FAM74A1Q5RGS3 127 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM14EPQ6UXP3 125 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 Q6ZRM9 215 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 Q6ZTC4 211 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 CCDC28AQ8IWP9 274 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 HSD17B11Q8NBQ5 300 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 RNF2Q99496 336 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 CHRDL1Q9BU40 450 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 C20orf24Q9BUV8 137 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 OR51B2Q9Y5P1 312 aa5.94□□□□□ -1.46
CCDC88C-214ENST00000557507 LRP1BQ9NZR2 4599 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 IGKV3-7A0A075B6H7 116 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 IGHV3-49A0A0A0MS15 119 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 IGHV3-21A0A0B4J1V1 117 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 C11orf94C9JXX5 98 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 FNDC10F2Z333 226 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 H3BP45 60 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 M0R2N4 97 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 NDUFA4O00483 81 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 UPK2O00526 184 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 CYB5BO43169 146 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 IFNA1P01562 189 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 RBMY1A1P0DJD3 496 aaKnown RBP5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 RBMY1CP0DJD4 496 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 ATP6V0CP27449 155 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 HLA-DMBP28068 263 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 RBMY1FQ15415 496 aaKnown RBP5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 OR8G2PQ6IF36 304 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 Q6ZRG5 221 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 OR10W1Q8NGF6 305 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 OR1L8Q8NGR8 309 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 BSCL2Q96G97 398 aaPredicted RBP5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 NARS2Q96I59 477 aaKnown RBP5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 QTRT1Q9BXR0 403 aaKnown RBP5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 HRH4Q9H3N8 390 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM14BQ9NUH8 114 aa5.93□□□□□ -1.46
CCDC88C-214ENST00000557507 IGHV4-28A0A0C4DH34 117 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 CHEK1O14757 476 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM50AO95807 157 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 MT-CO2P00403 227 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 H2AFB1P0C5Y9 115 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 PPT1P50897 306 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 DLK1P80370 383 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 PRCDQ00LT1 54 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 WT1-ASQ06250 92 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 ETFRF1Q6IPR1 90 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM182Q6ZP80 229 aaPredicted RBP5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 GBGT1Q8N5D6 347 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 SLC24A4Q8NFF2 622 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 FAM213BQ8TBF2 198 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 VN1R17PQ8TDU5 208 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 RHPN1-AS1Q9BWJ2 59 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 SCRT1Q9BWW7 348 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 WDR61Q9GZS3 305 aaKnown RBP5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 TREM1Q9NP99 234 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 SMPXQ9UHP9 88 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 HERC1Q15751 4861 aa5.92□□□□□ -1.46
CCDC88C-214ENST00000557507 APOBP04114 4563 aaKnown RBP5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 IGHV3OR16-13A0A075B7E8 117 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 ELOA3CA0A087WX78 387 aaPredicted RBP5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 IGHV3-74A0A0B4J1X5 117 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 TRAV10A0A0B4J240 114 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 IGHV7-4-1A0A0J9YVY3 117 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 C15orf62A8K5M9 175 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 INS-IGF2F8WCM5 200 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 K7EIM0 57 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 K7EMT4 169 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 CORTO00230 105 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 AMBPP02760 352 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 GIG44P09565 113 aaPredicted RBP5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 FGF7P21781 194 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 NPY1RP25929 384 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 IZUMO4Q1ZYL8 232 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 ACOT6Q3I5F7 207 aaPredicted RBP5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM41BQ5BJD5 291 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 TOR2AQ5JU69 321 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 FAM90A2PQ658T7 463 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 LEMD1Q68G75 181 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 PVRIGQ6DKI7 326 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 SPSB3Q6PJ21 355 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 SVBPQ8N300 66 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 FAM24BQ8N5W8 94 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 POM121L12Q8N7R1 296 aa5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 RNASEH2CQ8TDP1 164 aaKnown RBP5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 SRSF8Q9BRL6 282 aaKnown RBP5.91□□□□□ -1.46
CCDC88C-214ENST00000557507 HINT2Q9BX68 163 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms