RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 H1FXQ92522 213 aaKnown RBP9.83□□□□□ -0.84
SHMT2-207ENST00000553837 CCL17Q92583 94 aa9.83□□□□□ -0.84
SHMT2-207ENST00000553837 LINC00479Q96M42 142 aa9.83□□□□□ -0.84
SHMT2-207ENST00000553837 SPATA25Q9BR10 227 aa9.83□□□□□ -0.84
SHMT2-207ENST00000553837 MRPL32Q9BYC8 188 aaKnown RBP9.83□□□□□ -0.84
SHMT2-207ENST00000553837 FNDC4Q9H6D8 234 aaPredicted RBP9.83□□□□□ -0.84
SHMT2-207ENST00000553837 CTSZQ9UBR2 303 aa9.83□□□□□ -0.84
SHMT2-207ENST00000553837 RELNP78509 3460 aa9.83□□□□□ -0.84
SHMT2-207ENST00000553837 A6NDN8 102 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 E7EUB6 86 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 K7EQM0 130 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 APOA2P02652 100 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 PRCDQ00LT1 54 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 SOX21Q9Y651 276 aaPredicted RBP9.82□□□□□ -0.84
SHMT2-207ENST00000553837 SHISA9B4DS77 424 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 H0Y8G0 127 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 FOXA3P55318 350 aaPredicted RBP9.82□□□□□ -0.84
SHMT2-207ENST00000553837 FOXC1Q12948 553 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 ASPHD1Q5U4P2 390 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 OR2K2Q8NGT1 345 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 GEMIN7Q9H840 131 aaKnown RBP9.82□□□□□ -0.84
SHMT2-207ENST00000553837 PRNDQ9UKY0 176 aa9.82□□□□□ -0.84
SHMT2-207ENST00000553837 GAGE12HA6NDE8 117 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 E7EQL1 145 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 J3KRW8 73 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 UBE2L3P68036 154 aaKnown RBP9.81□□□□□ -0.84
SHMT2-207ENST00000553837 C2orf91Q6ZV80 131 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 ZNF714Q96N38 554 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 ZNF257Q9Y2Q1 563 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 PIEZO1Q92508 2521 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 VWC2LB2RUY7 222 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 PEX7O00628 323 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 ZNF207O43670 478 aaKnown RBP9.81□□□□□ -0.84
SHMT2-207ENST00000553837 MEF2CQ06413 473 aaPredicted RBP9.81□□□□□ -0.84
SHMT2-207ENST00000553837 FA2HQ7L5A8 372 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 RNASE6Q93091 150 aaKnown RBP9.81□□□□□ -0.84
SHMT2-207ENST00000553837 NDFIP1Q9BT67 221 aa9.81□□□□□ -0.84
SHMT2-207ENST00000553837 RNASE2P10153 161 aaKnown RBP9.8□□□□□ -0.84
SHMT2-207ENST00000553837 ATP5IP56385 69 aaPredicted RBP9.8□□□□□ -0.84
SHMT2-207ENST00000553837 TMEM30BQ3MIR4 351 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 LINC01545Q5VT33 79 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 CCDC144NLQ6NUI1 221 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 ZNF329Q86UD4 541 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 SLC25A2Q9BXI2 301 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 THYN1Q9P016 225 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 TLN1Q9Y490 2541 aaKnown RBP9.8□□□□□ -0.84
SHMT2-207ENST00000553837 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.8□□□□□ -0.84
SHMT2-207ENST00000553837 CGB1A6NKQ9 187 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 A8MWL6 223 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 LOXP28300 417 aaPredicted RBP9.8□□□□□ -0.84
SHMT2-207ENST00000553837 DLX1P56177 255 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 DLX6P56179 175 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 OR5AN1Q8NGI8 311 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 RITA1Q96K30 269 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 FAM167A-AS1Q96KT0 104 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 SCNM1Q9BWG6 230 aa9.8□□□□□ -0.84
SHMT2-207ENST00000553837 PLAUP00749 431 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 FAM87AP0C7U9 286 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 C10orf55Q5SWW7 151 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 FOXI2Q6ZQN5 318 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 OR9G1Q8NH87 305 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 ZC2HC1AQ96GY0 325 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 HARBI1Q96MB7 349 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 C7orf69Q9H7B7 122 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 DCHS2Q6V1P9 2916 aa9.79□□□□□ -0.84
SHMT2-207ENST00000553837 TRAV5A0A0B4J249 113 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 PRB3Q04118 309 aaPredicted RBP9.78□□□□□ -0.84
SHMT2-207ENST00000553837 C2orf83Q53S99 150 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 SHISA2Q6UWI4 295 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 OR10AG1Q8NH19 301 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 VSTM2AQ8TAG5 236 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 DPF1Q92782 380 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 RPP21Q9H633 154 aaKnown RBP9.78□□□□□ -0.84
SHMT2-207ENST00000553837 NDUFA4L2Q9NRX3 87 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 POLEQ07864 2286 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 A0A0G2JLM5 398 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 H3BUT2 72 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 K7ENP7 123 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 NDUFB3O43676 98 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 IGLV2-23P01705 113 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 UQCRFS1P47985 274 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 SSBP2P81877 361 aaPredicted RBP9.78□□□□□ -0.84
SHMT2-207ENST00000553837 TMEM177Q53S58 311 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 CT83Q5H943 113 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 OR4A5Q8NH83 315 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 OSR1Q8TAX0 266 aaPredicted RBP9.78□□□□□ -0.84
SHMT2-207ENST00000553837 FAM110AQ9BQ89 295 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 PAXXQ9BUH6 204 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 MCRIP2Q9BUT9 160 aaKnown RBP9.78□□□□□ -0.84
SHMT2-207ENST00000553837 MRPL16Q9NX20 251 aaKnown RBP9.78□□□□□ -0.84
SHMT2-207ENST00000553837 LRBAP50851 2863 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 PTPRQQ9UMZ3 2332 aa9.78□□□□□ -0.84
SHMT2-207ENST00000553837 CHEK1O14757 476 aa9.77□□□□□ -0.85
SHMT2-207ENST00000553837 GFRA4Q9GZZ7 299 aa9.77□□□□□ -0.85
SHMT2-207ENST00000553837 TPSG1Q9NRR2 321 aa9.77□□□□□ -0.85
SHMT2-207ENST00000553837 LYNX1G3V0Z9 82 aa9.77□□□□□ -0.85
SHMT2-207ENST00000553837 SNAI2O43623 268 aa9.77□□□□□ -0.85
SHMT2-207ENST00000553837 LYNX1P0DP58 116 aa9.77□□□□□ -0.85
SHMT2-207ENST00000553837 CD24P25063 80 aa9.77□□□□□ -0.85
SHMT2-207ENST00000553837 WT1-ASQ06250 92 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms