RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 DUX3Q96PT4 197 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 ELOVL1Q9BW60 279 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 TMEM231Q9H6L2 316 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 UBQLN2Q9UHD9 624 aa7.26□□□□□ -1.25
LIMA1-211ENST00000552338 A0A087X0K7 114 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 TRAV2A0A0B4J234 112 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 TRAV25A0A0B4J276 109 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 A0A1W2PPV4 95 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 ZNF320A2RRD8 509 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 ZNF253O75346 499 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 APOHP02749 345 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-211ENST00000552338 FOLR2P14207 255 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 RPL7P18124 248 aaKnown RBP7.25□□□□□ -1.25
LIMA1-211ENST00000552338 MEOX2P50222 304 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 KHDC3LQ587J8 217 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 NARS2Q96I59 477 aaKnown RBP7.25□□□□□ -1.25
LIMA1-211ENST00000552338 C17orf77Q96MU5 243 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 UHRF2Q96PU4 802 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 C20orf24Q9BUV8 137 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 PBDC1Q9BVG4 233 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 RHPN1-AS1Q9BWJ2 59 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 SLC25A2Q9BXI2 301 aa7.25□□□□□ -1.25
LIMA1-211ENST00000552338 COL6A5A8TX70 2615 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 NDUFS6O75380 124 aaKnown RBP7.24□□□□□ -1.25
LIMA1-211ENST00000552338 CXorf1O96002 111 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 HBE1P02100 147 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 PF4P02776 101 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 IGLC2P0DOY2 106 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 HIST1H1EP10412 219 aaKnown RBP7.24□□□□□ -1.25
LIMA1-211ENST00000552338 GP9P14770 177 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 PDE6HQ13956 83 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 DEFB114Q30KQ6 69 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 SPATA31B1PQ5VZV4 182 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 MIR17HGQ75NE6 70 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 SSX7Q7RTT5 188 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 BPIFA4PQ86YQ2 179 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 GRAMD2BQ96HH9 432 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 MCRIP2Q9BUT9 160 aaKnown RBP7.24□□□□□ -1.25
LIMA1-211ENST00000552338 SCRT1Q9BWW7 348 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 OR51M1Q9H341 326 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 HRH4Q9H3N8 390 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 DOK5Q9P104 306 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 SMAD5-AS1Q9Y6J3 95 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 ARL2-SNX15V9GYD0 113 aa7.24□□□□□ -1.25
LIMA1-211ENST00000552338 HELTA6NFD8 242 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 TSPAN4O14817 238 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 IGLV1-51P01701 117 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 NMBP08949 121 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 H2AFB1P0C5Y9 115 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 PSMB3P49720 205 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 FHITP49789 147 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 GUK1Q16774 197 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 CLLU1Q5K131 121 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 FAM74A1Q5RGS3 127 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 FAM122CQ6P4D5 195 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 LYPD1Q8N2G4 141 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 ARL6IP6Q8N6S5 226 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 CLEC5AQ9NY25 188 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 MLXQ9UH92 298 aa7.23□□□□□ -1.25
LIMA1-211ENST00000552338 TENM1Q9UKZ4 2725 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 IGHV3OR16-8A0A075B7F1 116 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 TRAV5A0A0B4J249 113 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 ZNF785A8K8V0 405 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 ZNF705EA8MWA4 302 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-211ENST00000552338 TEX46H3BTG2 121 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 GALR1P47211 349 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 PPT1P50897 306 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 PRR31Q5SQ13 230 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 C9orf66Q5T8R8 295 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 SAMD13Q5VXD3 122 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 SIGLEC15Q6ZMC9 328 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 OR8I2Q8N0Y5 310 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 FAM213BQ8TBF2 198 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 FXYD5Q96DB9 178 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 PAXXQ9BUH6 204 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 SLC25A22Q9H936 323 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 TMEM167BQ9NRX6 74 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 MED9Q9NWA0 146 aa7.22□□□□□ -1.25
LIMA1-211ENST00000552338 SORL1Q92673 2214 aa7.21□□□□□ -1.25
LIMA1-211ENST00000552338 TRBV19A0A075B6N1 114 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 A0A1W2PRE2 83 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 MAP1LC3B2A6NCE7 125 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 SOCS3O14543 225 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 ZNF207O43670 478 aaKnown RBP7.21□□□□□ -1.26
LIMA1-211ENST00000552338 NBEAP1P0C6P0 100 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 ARL14EPLP0DKL9 152 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 EDN2P20800 178 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 GCHFRP30047 84 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 TAGLN2P37802 199 aaKnown RBP7.21□□□□□ -1.26
LIMA1-211ENST00000552338 DCANP1Q8TF63 244 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 SFT2D1Q8WV19 159 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 FAM110AQ9BQ89 295 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 TXNDC17Q9BRA2 123 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 GPR61Q9BZJ8 451 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 NKX6-2Q9C056 277 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-211ENST00000552338 MAP1LC3BQ9GZQ8 125 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 ZNF586Q9NXT0 402 aa7.21□□□□□ -1.26
LIMA1-211ENST00000552338 STAB1Q9NY15 2570 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 TRRAPQ9Y4A5 3859 aa7.2□□□□□ -1.26
LIMA1-211ENST00000552338 H3BQ15 152 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms