RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 C1orf146Q5VVC0 180 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 OR13F1Q8NGS4 319 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 PYDC1Q8WXC3 89 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM56Q96MV1 263 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM70Q9BUB7 260 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 MAGT1Q9H0U3 335 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 NRN1Q9NPD7 142 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 RAB22AQ9UL26 194 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 MRPS16Q9Y3D3 137 aaKnown RBP4.4□□□□□ -1.71
LIMA1-204ENST00000549064 TNXBP22105 4242 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 TRAV26-1A0A087WT03 109 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 PLAC8L1A1L4L8 177 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 PMS2P5A8MQ11 134 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 LYRM9A8MSI8 78 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 F6UB75 175 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 H3BTX0 84 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 KRASP01116 189 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 OXTP01178 125 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 CTXN2P0C2S0 81 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 DTYMKP23919 212 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 EIF2B2P49770 351 aaKnown RBP4.39□□□□□ -1.71
LIMA1-204ENST00000549064 FXYD4P59646 89 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 ERVK-16P61578 105 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 TIGITQ495A1 244 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 KCTD21Q4G0X4 260 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 LINC01620Q4KN68 170 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 SPINK9Q5DT21 86 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 AADACL3Q5VUY0 350 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 CNIH2Q6PI25 160 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 ZNF818PQ6ZRF7 136 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 MS4A15Q8N5U1 240 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 OR6F1Q8NGZ6 308 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM203Q969S6 136 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM230Q96A57 120 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 GNPNAT1Q96EK6 184 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-204ENST00000549064 NARS2Q96I59 477 aaKnown RBP4.39□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM208Q9BTX3 173 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 SAV1Q9H4B6 383 aaPredicted RBP4.39□□□□□ -1.71
LIMA1-204ENST00000549064 COMMD9Q9P000 198 aa4.39□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM235A6NFC5 223 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 SNAPC5O75971 98 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 AZU1P20160 251 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 FCGR2CP31995 323 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 LPAR6P43657 344 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 RORCP51449 518 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 PSG9Q00887 426 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 OR5I1Q13606 314 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 CDNFQ49AH0 187 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 FAM78BQ5VT40 261 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM91Q6ZNR0 172 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 Q6ZRP5 223 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 TPRA1Q86W33 373 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 BPIFB6Q8NFQ5 453 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 OR4C16Q8NGL9 310 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 LINC00052Q96N35 136 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 RABL2AQ9UBK7 228 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-204ENST00000549064 ANXA10Q9UJ72 324 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 PRNDQ9UKY0 176 aa4.38□□□□□ -1.71
LIMA1-204ENST00000549064 SIVA1O15304 175 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 PPYP01298 95 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 IGKV1-17P01599 117 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 ASIPP42127 132 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 AP2S1P53680 142 aaPredicted RBP4.37□□□□□ -1.71
LIMA1-204ENST00000549064 RPS25P62851 125 aaKnown RBP4.37□□□□□ -1.71
LIMA1-204ENST00000549064 MSMO1Q15800 293 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 ZNF79Q15937 498 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 FOXI2Q6ZQN5 318 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 AHSA2Q719I0 299 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM17Q86X19 198 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 LGALS14Q8TCE9 139 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 RXFP4Q8TDU9 374 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 ATG5Q9H1Y0 275 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 V9GY05 133 aa4.37□□□□□ -1.71
LIMA1-204ENST00000549064 ZNF701M0R085 212 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-204ENST00000549064 M0R2Z0 102 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 TSC22D2O75157 780 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 ELK1P19419 428 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 F2RP25116 425 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 OR10A3P58181 314 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 KRTAP10-4P60372 401 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-204ENST00000549064 PRCDQ00LT1 54 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 HACD4Q5VWC8 232 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 LAIR2Q6ISS4 152 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 AMTNQ6UX39 209 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 ZNF555Q8NEP9 628 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 IGF2BP2-AS1Q96M15 143 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 Q9HAA7 133 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 MBD2Q9UBB5 411 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 PYGO1Q9Y3Y4 419 aa4.36□□□□□ -1.71
LIMA1-204ENST00000549064 A0A0J9YX75 114 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 METTL21EPA6NDL7 271 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 FBLL1A6NHQ2 334 aaKnown RBP4.35□□□□□ -1.71
LIMA1-204ENST00000549064 CRXO43186 299 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-204ENST00000549064 M6PRP20645 277 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 GNG2P59768 71 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 ARPC4P59998 168 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 ERHP84090 104 aaKnown RBP4.35□□□□□ -1.71
LIMA1-204ENST00000549064 SPINK13Q1W4C9 94 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 BAP18Q8IXM2 172 aa4.35□□□□□ -1.71
LIMA1-204ENST00000549064 OR4X1Q8NH49 305 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms