RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RAB37Q96AX2 223 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 PRELID3AQ96N28 172 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 CTSZQ9UBR2 303 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 TRBV20OR9-2A0A075B6H5 130 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 TRAV9-1A0A075B6T8 112 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 K7ENP7 123 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 GPX1P07203 203 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 MYOZ3Q8TDC0 251 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 PRDM13Q9H4Q3 707 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 FXYD7P58549 80 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 C15orf32Q32M92 178 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 FAM168AQ92567 244 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 TNFRSF14Q92956 283 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 PHLDA3Q9Y5J5 127 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 ZFYVE26Q68DK2 2539 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 A0A1B0GWJ7 208 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 IGFL2Q6UWQ7 119 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 C22orf34Q6ZV56 151 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 Q8TCH9 128 aa12.64□□□□□ -0.39
CUX1-211ENST00000546411 FNDC4Q9H6D8 234 aaPredicted RBP12.64□□□□□ -0.39
CUX1-211ENST00000546411 TRAV40A0A0B4J280 105 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 ITGB1BP1O14713 200 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 PROP1O75360 226 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 PRSS33Q8NF86 280 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 NDUFS7O75251 213 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 SCGB1D4Q6XE38 83 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 WDFY4Q6ZS81 3184 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 C5orf64Q2M2E5 130 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 FAM74A4Q5TZK3 123 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 ODF3L1Q8IXM7 274 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 HIVEP3Q5T1R4 2406 aa12.63□□□□□ -0.39
CUX1-211ENST00000546411 SRD5A1P18405 259 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 NIT1Q86X76 327 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 WFDC12Q8WWY7 111 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 MAP1LC3AQ9H492 121 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 ARHGAP32A7KAX9 2087 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 ZFP30Q9Y2G7 519 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 C7orf71A4D174 169 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 TMEM97Q5BJF2 176 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 PVRIGQ6DKI7 326 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 TRGV9Q99603 122 aa12.62□□□□□ -0.39
CUX1-211ENST00000546411 TCF15Q12870 199 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 DMRTC2Q8IXT2 367 aaPredicted RBP12.61□□□□□ -0.39
CUX1-211ENST00000546411 ZNF833PQ6ZTB9 187 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 FER1L6-AS1Q8NA97 138 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 BPESC1Q9GZL8 116 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 NUDT3O95989 172 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 DMRTA1Q5VZB9 504 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 NDPQ00604 133 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 ZNF502Q8TBZ5 544 aa12.61□□□□□ -0.39
CUX1-211ENST00000546411 VCANP13611 3396 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 GNLYP22749 145 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 TEX36Q5VZQ5 186 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 A6NNC1 897 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 LINC00614P0C842 121 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 BRWD1-AS2P59051 145 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 ZNF329Q86UD4 541 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 ZNF295-AS1Q8N0V1 137 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 DEFB104AQ8WTQ1 72 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 C11orf1Q9H5F2 150 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 MIEN1Q9BRT3 115 aa12.6□□□□□ -0.39
CUX1-211ENST00000546411 NCR2O95944 276 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 LHBP01229 141 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 RPL24P83731 157 aaKnown RBP12.59□□□□□ -0.39
CUX1-211ENST00000546411 FBLN7Q53RD9 439 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 VPS13AQ96RL7 3174 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 TGFAP01135 160 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 MORN5Q5VZ52 161 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 A0A1W2PS18 150 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 GCSHP23434 173 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 PRR20EP86478 221 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 PRR20CP86479 221 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 PRR20DP86480 221 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 PRR20BP86481 221 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 PRR20AP86496 221 aa12.59□□□□□ -0.39
CUX1-211ENST00000546411 C3orf79P0CE67 100 aa12.58□□□□□ -0.39
CUX1-211ENST00000546411 LBHQ53QV2 105 aaPredicted RBP12.58□□□□□ -0.39
CUX1-211ENST00000546411 FAM71F2Q6NXP2 309 aa12.58□□□□□ -0.39
CUX1-211ENST00000546411 RITA1Q96K30 269 aa12.58□□□□□ -0.39
CUX1-211ENST00000546411 EVI2AP22794 236 aa12.58□□□□□ -0.4
CUX1-211ENST00000546411 LAMA1P25391 3075 aa12.58□□□□□ -0.4
CUX1-211ENST00000546411 ORMDL3Q8N138 153 aa12.58□□□□□ -0.4
CUX1-211ENST00000546411 IGHV3OR16-12A0A075B7B8 117 aa12.58□□□□□ -0.4
CUX1-211ENST00000546411 K7EN84 100 aa12.58□□□□□ -0.4
CUX1-211ENST00000546411 RPS20P60866 119 aaKnown RBP12.57□□□□□ -0.4
CUX1-211ENST00000546411 ZNF414Q96IQ9 312 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 SLC25A2Q9BXI2 301 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 F2Z2F3 143 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 SRSF9Q13242 221 aaKnown RBP eCLIP12.57□□□□□ -0.4
CUX1-211ENST00000546411 FAM106AQ4KMX7 169 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 CENPVQ7Z7K6 275 aaPredicted RBP12.57□□□□□ -0.4
CUX1-211ENST00000546411 TMEM160Q9NX00 188 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 E7EUB6 86 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 COX6B1P14854 86 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 DAZAP2Q15038 168 aaPredicted RBP12.57□□□□□ -0.4
CUX1-211ENST00000546411 LAMTOR2Q9Y2Q5 125 aa12.57□□□□□ -0.4
CUX1-211ENST00000546411 TRAV8-6A0A0B4J262 113 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 FABP5P3A8MUU1 101 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 ID1P41134 155 aa12.56□□□□□ -0.4
CUX1-211ENST00000546411 RAB9AP51151 201 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms