RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	SPATA12	Q7Z6I5	190 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	ZNF331	Q9NQX6	463 aa	Predicted RBP	12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	IZUMO1R	A6ND01	250 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	RNASE2	P10153	161 aa	Known RBP	12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	CRYBB3	P26998	211 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	RTL8B	Q17RB0	113 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	WIPF2	Q8TF74	440 aa	Predicted RBP	12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	LINC00574	Q9H8X3	128 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	TNFRSF19	Q9NS68	423 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	TECR	Q9NZ01	308 aa	Known RBP	12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	MRPL36	Q9P0J6	103 aa	Known RBP	12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	TP73-AS1	Q9UF72	201 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	LINC00312	Q9Y6C7	94 aa		12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	UTP20	O75691	2785 aa	Known RBP	12.01	□□□□□ -0.49
CHFR-223	ENST00000544268	GAGE10	A6NGK3	116 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	CGB1	A6NKQ9	187 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	HLA-DRB1	P01911	266 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	FXYD3	Q14802	87 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	ZNF714	Q96N38	554 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	PRND	Q9UKY0	176 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	MALRD1	Q5VYJ5	2156 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	UBR5	O95071	2799 aa	Predicted RBP	12	□□□□□ -0.49
CHFR-223	ENST00000544268	POU2AF1	Q16633	256 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	TIGIT	Q495A1	244 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	UFSP1	Q6NVU6	142 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	PQLC2	Q6ZP29	291 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	ZNF833P	Q6ZTB9	187 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	OR1B1	Q8NGR6	318 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	OR1N2	Q8NGR9	330 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	IGFBPL1	Q8WX77	278 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	ARL2-SNX15	V9GYD0	113 aa		12	□□□□□ -0.49
CHFR-223	ENST00000544268	NDUFB3	O43676	98 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	KIR3DL3	Q8N743	410 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	NHLRC2	Q8NBF2	726 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	CACNG8	Q8WXS5	425 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	KAAG1	Q9UBP8	84 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	GGTLC3	B5MD39	225 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	HIST1H1A	Q02539	215 aa	Predicted RBP	11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	WT1-AS	Q06250	92 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	RNASEK	Q6P5S7	137 aa	Known RBP	11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	GTF2H5	Q6ZYL4	71 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	ADTRP	Q96IZ2	230 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	LINC00479	Q96M42	142 aa		11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.99	□□□□□ -0.49
CHFR-223	ENST00000544268	LRRK2	Q5S007	2527 aa		11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	ARHGAP32	A7KAX9	2087 aa		11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	OR10X1	Q8NGY0	326 aa		11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	IGHV3-21	A0A0B4J1V1	117 aa		11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	BRI3	O95415	125 aa		11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	IBA57	Q5T440	356 aa	Known RBP	11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	NEU4	Q8WWR8	484 aa	Predicted RBP	11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	CRYBG3	Q68DQ2	2970 aa		11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	FAM208B	Q5VWN6	2430 aa		11.98	□□□□□ -0.49
CHFR-223	ENST00000544268	VPS13C	Q709C8	3753 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	hDV102S1	A0JD36	115 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	C7orf71	A4D174	169 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	CNTFR	P26992	372 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	RAB31	Q13636	194 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	C5orf17	Q8NAS9	161 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	CHRDL1	Q9BU40	450 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	SCRT2	Q9NQ03	307 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	NDUFA4L2	Q9NRX3	87 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	NDUFS7	O75251	213 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	PYY	P10082	97 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	RPL8	P62917	257 aa	Known RBP	11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	MEF2C	Q06413	473 aa	Predicted RBP	11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	PRR31	Q5SQ13	230 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	FAM162B	Q5T6X4	162 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	ZNF257	Q9Y2Q1	563 aa		11.97	□□□□□ -0.49
CHFR-223	ENST00000544268	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.96	□□□□□ -0.49
CHFR-223	ENST00000544268	OR5AN1	Q8NGI8	311 aa		11.96	□□□□□ -0.49
CHFR-223	ENST00000544268	FLYWCH2	Q96CP2	140 aa	Known RBP	11.96	□□□□□ -0.49
CHFR-223	ENST00000544268	RAB9B	Q9NP90	201 aa		11.96	□□□□□ -0.49
CHFR-223	ENST00000544268	SERTAD4	Q9NUC0	356 aa		11.96	□□□□□ -0.49
CHFR-223	ENST00000544268	SYS1-DBNDD2	H3BUS1	97 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	FSTL3	O95633	263 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	CA1	P00915	261 aa	Predicted RBP	11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	IGLV2-23	P01705	113 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	PRB4	P10163	310 aa	Predicted RBP	11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	AZU1	P20160	251 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	GPR6	P46095	362 aa	Predicted RBP	11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	CKS1B	P61024	79 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	CD69	Q07108	199 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	C2orf83	Q53S99	150 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	NEGR1	Q7Z3B1	354 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	TMEM191A	Q9H0A3	160 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	MS4A6A	Q9H2W1	248 aa		11.96	□□□□□ -0.5
CHFR-223	ENST00000544268	FAM231B	A6NCW3	169 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	OR2J3	O76001	311 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	IGLV2-8	P01709	118 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	GPR183	P32249	361 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	SEC11A	P67812	179 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	FAM120AOS	Q5T036	256 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	HCP5	Q6MZN7	132 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	MED13L	Q71F56	2210 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268		A0A087X0K7	114 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	ENSA	O43768	121 aa	Known RBP	11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	APOA2	P02652	100 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	MRGPRG-AS1	Q2M3A8	158 aa		11.95	□□□□□ -0.5
CHFR-223	ENST00000544268	ZNF841	Q6ZN19	808 aa		11.95	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms