RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 HAPLN4Q86UW8 402 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 POLR3KQ9Y2Y1 108 aaPredicted RBP12.6□□□□□ -0.39
CHD4-210ENST00000544040 NMSQ5H8A3 153 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 H3BUX3 64 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 DKK1O94907 266 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 C8orf49Q96NF6 230 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 SNHG12Q9BXW3 62 aa12.6□□□□□ -0.39
CHD4-210ENST00000544040 SVILO95425 2214 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 IGHV3-16A0A0C4DH30 117 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 TMEM213A2RRL7 107 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 MRPL27Q9P0M9 148 aaKnown RBP12.59□□□□□ -0.39
CHD4-210ENST00000544040 MSRB2Q9Y3D2 182 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 LY6G5BQ8NDX9 201 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 MORN5Q5VZ52 161 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 TMEM14EPQ6UXP3 125 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 PIP4P2Q8N4L2 257 aa12.59□□□□□ -0.39
CHD4-210ENST00000544040 TRBV7-1A0A0A6YYK4 115 aa12.58□□□□□ -0.39
CHD4-210ENST00000544040 ARMS2P0C7Q2 107 aa12.58□□□□□ -0.39
CHD4-210ENST00000544040 PFN2P35080 140 aa12.58□□□□□ -0.39
CHD4-210ENST00000544040 LIME1Q9H400 295 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 CFHR2P36980 270 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 GAGE1Q13065 139 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 PMVKQ15126 192 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 C9orf139Q6ZV77 190 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 TSSC4Q9Y5U2 329 aaPredicted RBP12.58□□□□□ -0.4
CHD4-210ENST00000544040 ARHGEF17Q96PE2 2063 aaPredicted RBP12.58□□□□□ -0.4
CHD4-210ENST00000544040 EFNA2O43921 213 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 RALGAPA1Q6GYQ0 2036 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 ADCYAP1P18509 176 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 TP53TG1Q9Y2A0 90 aa12.58□□□□□ -0.4
CHD4-210ENST00000544040 SOCS3O14543 225 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 KLHL30-AS1Q8NEE0 82 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 Q86TA4 180 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 NHSL1Q5SYE7 1610 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 TMEM178BH3BS89 294 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 SRRM5B3KS81 715 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 DTX1Q86Y01 620 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 TRAV12-1A0A0B4J245 112 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 A0A0G2JRQ6 117 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 GAS1P54826 345 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 FAM166AQ6J272 317 aa12.57□□□□□ -0.4
CHD4-210ENST00000544040 COL11A1P12107 1806 aaPredicted RBP12.57□□□□□ -0.4
CHD4-210ENST00000544040 TRAV25A0A0B4J276 109 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 BUB1B-PAK6H3BSN5 160 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 PRB1P04280 392 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 RHPN1-AS1Q9BWJ2 59 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 C15orf62A8K5M9 175 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 SLC25A16P16260 332 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 SPSB3Q6PJ21 355 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 GGNQ86UU5 652 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 VWCEQ96DN2 955 aa12.56□□□□□ -0.4
CHD4-210ENST00000544040 FLVCR1-AS1Q8TAF5 88 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 TRAV26-2A0A0B4J265 109 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 HAMPP81172 84 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 C5orf64Q2M2E5 130 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 GAFA1Q96PS6 74 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 COL18A1P39060 1754 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 GAGE12JA6NER3 117 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 MST1P26927 711 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 GAGE4Q13068 117 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 GAGE5Q13069 117 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 MRPL52Q86TS9 123 aaKnown RBP12.55□□□□□ -0.4
CHD4-210ENST00000544040 IL17RELQ6ZVW7 336 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 TMEM126AQ9H061 195 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 ZNRD1Q9P1U0 126 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 KLK9Q9UKQ9 250 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 ATAD5Q96QE3 1844 aa12.55□□□□□ -0.4
CHD4-210ENST00000544040 IGLV3-12A0A075B6K2 115 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 IGLV3-32A0A0A0MS00 114 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 SCN4AP35499 1836 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 LOC102723996A0A087X1L8 192 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 SIGLEC9Q9Y336 463 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 LY96Q9Y6Y9 160 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 COL4A1P02462 1669 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 LY6HO94772 140 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 MYOFQ9NZM1 2061 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 HOXD3P31249 432 aaPredicted RBP12.54□□□□□ -0.4
CHD4-210ENST00000544040 LYPD2Q6UXB3 125 aa12.54□□□□□ -0.4
CHD4-210ENST00000544040 NXPH4O95158 308 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 ZNF883P0CG24 379 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 SYNJ2BPP57105 145 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 ASPHD1Q5U4P2 390 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 ZNF236Q9UL36 1845 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 IGHV3-38A0A0C4DH36 116 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 KLHDC3Q9BQ90 382 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 A8MWP6 167 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 CMC4P56277 68 aaPredicted RBP12.53□□□□□ -0.4
CHD4-210ENST00000544040 TRPT1Q86TN4 253 aaKnown RBP12.53□□□□□ -0.4
CHD4-210ENST00000544040 RS1O15537 224 aa12.53□□□□□ -0.4
CHD4-210ENST00000544040 OVOL3O00110 214 aa12.52□□□□□ -0.4
CHD4-210ENST00000544040 DEFB131AP59861 70 aa12.52□□□□□ -0.4
CHD4-210ENST00000544040 E9PLN8 166 aa12.52□□□□□ -0.41
CHD4-210ENST00000544040 NEGR1Q7Z3B1 354 aa12.52□□□□□ -0.41
CHD4-210ENST00000544040 PNRC2Q9NPJ4 139 aaKnown RBP12.52□□□□□ -0.41
CHD4-210ENST00000544040 ESPL1Q14674 2120 aa12.52□□□□□ -0.41
CHD4-210ENST00000544040 SEC16AO15027 2179 aa12.52□□□□□ -0.41
CHD4-210ENST00000544040 IGKV1-16P04430 117 aa12.52□□□□□ -0.41
CHD4-210ENST00000544040 RNASE2P10153 161 aaKnown RBP12.52□□□□□ -0.41
CHD4-210ENST00000544040 SIPA1L3O60292 1781 aaPredicted RBP12.52□□□□□ -0.41
CHD4-210ENST00000544040 Q6P435 159 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms