RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 SIRPDQ9H106 197 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 CSTL1Q9H114 145 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 NRN1Q9NPD7 142 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 IGSF10Q6WRI0 2623 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 A0A1W2PS18 150 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 APELAP0DMC3 54 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 AMTP48728 403 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 TMEM136Q6ZRR5 245 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 THAP8Q8NA92 274 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 GNB1LQ9BYB4 327 aa8.53□□□□□ -1.04
CLIP1-210ENST00000538120 TRAV9-1A0A075B6T8 112 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 CD24P25063 80 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 CX3CL1P78423 397 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 BPESC1Q9GZL8 116 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 WNT10AQ9GZT5 417 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 GGTLC3B5MD39 225 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 IGHV4-39P01824 125 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 OR5G3P0C626 314 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 NBEAP1P0C6P0 100 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 SRIP30626 198 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 CEACAM3P40198 252 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 CTRLP40313 264 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 SPATA45Q537H7 98 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 PRR31Q5SQ13 230 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 ATOH7Q8N100 152 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 NPBQ8NG41 125 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 FAM168AQ92567 244 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 ZMAT4Q9H898 229 aa8.52□□□□□ -1.05
CLIP1-210ENST00000538120 IGHV2-70DA0A0C4DH43 119 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 BMPR1BO00238 502 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 ZNF253O75346 499 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 SRSF12Q8WXF0 261 aaKnown RBP8.51□□□□□ -1.05
CLIP1-210ENST00000538120 LINC00479Q96M42 142 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 SLC25A33Q9BSK2 321 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 LY96Q9Y6Y9 160 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 PLXNB1O43157 2135 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 TCRBV4S1A1TA0A5B7 111 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 OR7C2O60412 319 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 NDUFA3O95167 84 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 MT-CO2P00403 227 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 MOSP00540 346 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 IGLV2-8P01709 118 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 MGST1P10620 155 aaKnown RBP8.51□□□□□ -1.05
CLIP1-210ENST00000538120 C5orf64Q2M2E5 130 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 MORN5Q5VZ52 161 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 AJUBAQ96IF1 538 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 KCNS1Q96KK3 526 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 RNF2Q99496 336 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 SERTAD4Q9NUC0 356 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 ZNF586Q9NXT0 402 aa8.51□□□□□ -1.05
CLIP1-210ENST00000538120 F11RQ9Y624 299 aaKnown RBP8.51□□□□□ -1.05
CLIP1-210ENST00000538120 NBR2O15453 112 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 C3orf79P0CE67 100 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 PATE2Q6UY27 113 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 MRPL52Q86TS9 123 aaKnown RBP8.5□□□□□ -1.05
CLIP1-210ENST00000538120 NIT1Q86X76 327 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 STPG4Q8N801 248 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 FAM167A-AS1Q96KT0 104 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 C19orf24Q9BVV8 132 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 NAV3Q8IVL0 2385 aa8.5□□□□□ -1.05
CLIP1-210ENST00000538120 IGHV3-21A0A0B4J1V1 117 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 LCN12Q6JVE5 192 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 Q6ZVH6 145 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 OR4B1Q8NGF8 309 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 TECRQ9NZ01 308 aaKnown RBP8.49□□□□□ -1.05
CLIP1-210ENST00000538120 CDC42EP3Q9UKI2 254 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 TRBV9A0A0B4J1U6 114 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 TRAV5A0A0B4J249 113 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 CBY3A6NI87 242 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 HYPMO75409 117 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 NDUFB8O95169 186 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 PRB1P04280 392 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 NTF3P20783 257 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 PLGLAQ15195 96 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 TIGITQ495A1 244 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 IBA57Q5T440 356 aaKnown RBP8.49□□□□□ -1.05
CLIP1-210ENST00000538120 MINOS1Q5TGZ0 78 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 Q8N6K4 173 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 TSKUQ8WUA8 353 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 BBC3Q96PG8 261 aaPredicted RBP8.49□□□□□ -1.05
CLIP1-210ENST00000538120 SLC25A2Q9BXI2 301 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 DNAJC4Q9NNZ3 241 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 MINOS1-NBL1R4GNA1 71 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 ACACBO00763 2458 aa8.49□□□□□ -1.05
CLIP1-210ENST00000538120 TCF21O43680 179 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 ZNF324O75467 553 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-210ENST00000538120 IGLC2P0DOY2 106 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 IGLC3P0DOY3 106 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 MFAP4P55083 255 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 EBI3Q14213 229 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 COL5A1-AS1Q5SY13 56 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 TMEM116Q8NCL8 245 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 ALKBH7Q9BT30 221 aaPredicted RBP8.48□□□□□ -1.05
CLIP1-210ENST00000538120 OSTCQ9NRP0 149 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 OOSP1A8MZH6 123 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 I3L2K1 104 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 K7EP13 123 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 TOX4O94842 621 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 C8orf88P0DMB2 117 aa8.48□□□□□ -1.05
CLIP1-210ENST00000538120 OR10J3Q5JRS4 329 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms