RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 PPIAL4DF5H284 164 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 TMEM178BH3BS89 294 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 K7EP13 123 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 K7EQM0 130 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 CCL21O00585 134 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 TNFRSF13BO14836 293 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-233ENST00000535896 NDUFB3O43676 98 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 IGHV3-7P01780 117 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 TCRAP04437 139 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 NBEAP1P0C6P0 100 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 FRMD6-AS1P0C7T7 363 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 PPIAL4FP0DN26 164 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 PYYP10082 97 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 MYOD1P15172 320 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 NTF3P20783 257 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 UBE2V1Q13404 147 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 KIAA1644Q3SXP7 199 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 TMEM155Q4W5P6 130 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 SPRNQ5BIV9 151 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 MORN5Q5VZ52 161 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 LEMD1Q68G75 181 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 C12orf54Q6X4T0 127 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 Q86TA4 180 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 TMEM75Q8N9X5 138 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 OR4F17Q8NGA8 305 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 OR10W1Q8NGF6 305 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 OR2T6Q8NHC8 308 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 DAZAP1Q96EP5 407 aaKnown RBP5.06□□□□□ -1.6
SYNE1-233ENST00000535896 SH3BGRL2Q9UJC5 107 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 PPIAL4AQ9Y536 164 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 PLCE1Q9P212 2302 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 NAV3Q8IVL0 2385 aa5.06□□□□□ -1.6
SYNE1-233ENST00000535896 LOC102724200A0A096LPH7 203 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-233ENST00000535896 IGHV2-70DA0A0C4DH43 119 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 OR4C46A6NHA9 309 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 A6NNC1 897 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 SYS1-DBNDD2H3BUS1 97 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 SPINK4O60575 86 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 LEPROTL1O95214 131 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 CA1P00915 261 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-233ENST00000535896 CRYGBP07316 175 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 RPL27AP46776 148 aaKnown RBP5.05□□□□□ -1.6
SYNE1-233ENST00000535896 DLX6P56179 175 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 SLC35B1P78383 322 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 PDE6HQ13956 83 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 BATFQ16520 125 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 FAM120AOSQ5T036 256 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 UTF1Q5T230 341 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 LCE4AQ5TA78 99 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 GDF5OSQ5U4N7 250 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 TMEM200BQ69YZ2 307 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 EBLN2Q6P2I7 272 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 RNASEKQ6P5S7 137 aaKnown RBP5.05□□□□□ -1.6
SYNE1-233ENST00000535896 FAM19A2Q8N3H0 131 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 STPG4Q8N801 248 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 FAM168AQ92567 244 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 RND1Q92730 232 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 ZNF48Q96MX3 618 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-233ENST00000535896 SSBP3Q9BWW4 388 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-233ENST00000535896 MAP1LC3CQ9BXW4 147 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 NPFFR1Q9GZQ6 430 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 Q9H3A6 140 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 HIGD1AQ9Y241 93 aa5.05□□□□□ -1.6
SYNE1-233ENST00000535896 F11RQ9Y624 299 aaKnown RBP5.05□□□□□ -1.6
SYNE1-233ENST00000535896 TRAV30A0A087WSZ9 112 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.04□□□□□ -1.6
SYNE1-233ENST00000535896 TRAV5A0A0B4J249 113 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 IGHV1-24A0A0C4DH33 117 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 PGPA6NDG6 321 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 CHEK1O14757 476 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 NDUFB8O95169 186 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 MOSP00540 346 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 THBDP07204 575 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 IGHV1-8P0DP01 117 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 IGLL1P15814 213 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 S100A7P31151 101 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 CSN1S1P47710 185 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 RHOGP84095 191 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 RIGQ13278 110 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 ADIPOQQ15848 244 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 Q56UQ5 140 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 FAM201AQ5SY85 155 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 PRR27Q6MZM9 219 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 SLC25A34Q6PIV7 304 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 DUX4L9Q6RFH8 374 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-233ENST00000535896 VHLLQ6RSH7 139 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 ZNF493Q6ZR52 646 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 CIARTQ8N365 385 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-233ENST00000535896 H1FXQ92522 213 aaKnown RBP5.04□□□□□ -1.6
SYNE1-233ENST00000535896 COL12A1Q99715 3063 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 WNT10AQ9GZT5 417 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 TMEM133Q9H2Q1 129 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 NGBQ9NPG2 151 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 CENPEQ02224 2701 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 DOPEY2Q9Y3R5 2298 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 A0A0G2JNJ9 132 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 A0A1B0GUT8 65 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 C16orf97H3BN30 126 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 SLC25A17O43808 307 aa5.04□□□□□ -1.6
SYNE1-233ENST00000535896 TOX4O94842 621 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms