RNA–Protein interactions for RNA: ENST00000533908.5

UBXN1-216, Transcript of UBX domain protein 1, humanhuman

TSL 1 (best)

Gene UBXN1, Length 739 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN1-216ENST00000533908 LRTM2Q8N967 370 aa12.65□□□□□ -0.38
UBXN1-216ENST00000533908 SLC25A39Q9BZJ4 359 aaPredicted RBP12.65□□□□□ -0.38
UBXN1-216ENST00000533908 CCDC59Q9P031 241 aaKnown RBP12.65□□□□□ -0.38
UBXN1-216ENST00000533908 RSL24D1Q9UHA3 163 aaKnown RBP12.65□□□□□ -0.38
UBXN1-216ENST00000533908 TMED3Q9Y3Q3 217 aa12.65□□□□□ -0.38
UBXN1-216ENST00000533908 TRAV12-2A0A075B6T6 113 aa12.64□□□□□ -0.39
UBXN1-216ENST00000533908 DUXBA0A1W2PPF3 345 aa12.64□□□□□ -0.39
UBXN1-216ENST00000533908 LYRM9A8MSI8 78 aa12.64□□□□□ -0.39
UBXN1-216ENST00000533908 WRBO00258 174 aa12.64□□□□□ -0.39
UBXN1-216ENST00000533908 CFDP00746 253 aaPredicted RBP12.64□□□□□ -0.39
UBXN1-216ENST00000533908 PRB4P10163 310 aaPredicted RBP12.64□□□□□ -0.39
UBXN1-216ENST00000533908 SLC25A6P12236 298 aa12.64□□□□□ -0.39
UBXN1-216ENST00000533908 FAM3BP58499 235 aaPredicted RBP12.64□□□□□ -0.39
UBXN1-216ENST00000533908 TMEM128Q5BJH2 165 aa12.64□□□□□ -0.39
UBXN1-216ENST00000533908 OR1B1Q8NGR6 318 aa12.64□□□□□ -0.39
UBXN1-216ENST00000533908 SLIRPQ9GZT3 109 aaKnown RBP12.64□□□□□ -0.39
UBXN1-216ENST00000533908 NBDYA0A0U1RRE5 68 aa12.63□□□□□ -0.39
UBXN1-216ENST00000533908 FABP12A6NFH5 140 aa12.63□□□□□ -0.39
UBXN1-216ENST00000533908 SYNGR2O43760 224 aa12.63□□□□□ -0.39
UBXN1-216ENST00000533908 DUSP14O95147 198 aaKnown RBP12.63□□□□□ -0.39
UBXN1-216ENST00000533908 TSPOP30536 169 aa12.63□□□□□ -0.39
UBXN1-216ENST00000533908 BPIFCQ8NFQ6 507 aa12.63□□□□□ -0.39
UBXN1-216ENST00000533908 ATG101Q9BSB4 218 aa12.63□□□□□ -0.39
UBXN1-216ENST00000533908 MRPS26Q9BYN8 205 aaKnown RBP12.63□□□□□ -0.39
UBXN1-216ENST00000533908 LRP1BQ9NZR2 4599 aa12.62□□□□□ -0.39
UBXN1-216ENST00000533908 F5H768 121 aa12.62□□□□□ -0.39
UBXN1-216ENST00000533908 INSP01308 110 aa12.62□□□□□ -0.39
UBXN1-216ENST00000533908 FGL1Q08830 312 aa12.62□□□□□ -0.39
UBXN1-216ENST00000533908 SPANXN5Q5MJ07 72 aa12.62□□□□□ -0.39
UBXN1-216ENST00000533908 TMEM147Q9BVK8 224 aa12.62□□□□□ -0.39
UBXN1-216ENST00000533908 C16orf90A8MZG2 172 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 H3BP45 60 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 H3BRN7 92 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 MED6O75586 246 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 NUDT3O95989 172 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 VAMP1P23763 118 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 ACOT7LQ6ZUV0 252 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 TRIM63Q969Q1 353 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 GPR82Q96P67 336 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 CIB3Q96Q77 187 aaPredicted RBP12.61□□□□□ -0.39
UBXN1-216ENST00000533908 SHANK2-AS3Q9BTD1 123 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 LINC00588Q9Y4M8 146 aa12.61□□□□□ -0.39
UBXN1-216ENST00000533908 SFT2D2O95562 160 aa12.6□□□□□ -0.39
UBXN1-216ENST00000533908 HOXB5P09067 269 aa12.6□□□□□ -0.39
UBXN1-216ENST00000533908 PPP1R1AQ13522 171 aa12.6□□□□□ -0.39
UBXN1-216ENST00000533908 C6orf223Q8N319 242 aa12.6□□□□□ -0.39
UBXN1-216ENST00000533908 RAB2BQ8WUD1 216 aa12.6□□□□□ -0.39
UBXN1-216ENST00000533908 CBY3A6NI87 242 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 PMS2P5A8MQ11 134 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 BOLA2-SMG1P6H3BVE0 249 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 CDK2AP2O75956 126 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 TMBIM6P55061 237 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 B2MP61769 119 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 RPP30P78346 268 aaKnown RBP12.59□□□□□ -0.39
UBXN1-216ENST00000533908 AKR1C1Q04828 323 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 CYP2G1PQ6ZSU1 146 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 TMEM144Q7Z5S9 345 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 ZNF738Q8NE65 137 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 RNF141Q8WVD5 230 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 LINC01587Q99440 93 aa12.59□□□□□ -0.39
UBXN1-216ENST00000533908 CCNKO75909 580 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 ATP5G1P05496 136 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 CXCL3P19876 107 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 ATP5G3P48201 142 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 ID3Q02535 119 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 PATE2Q6UY27 113 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 OR8A1Q8NGG7 326 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 UHRF2Q96PU4 802 aa12.58□□□□□ -0.4
UBXN1-216ENST00000533908 STRAPQ9Y3F4 350 aaKnown RBP12.58□□□□□ -0.4
UBXN1-216ENST00000533908 PIGBOS1A0A0B4J2F0 54 aa12.57□□□□□ -0.4
UBXN1-216ENST00000533908 IL5P05113 134 aa12.57□□□□□ -0.4
UBXN1-216ENST00000533908 HTN1P15515 57 aa12.57□□□□□ -0.4
UBXN1-216ENST00000533908 RHOBP62745 196 aa12.57□□□□□ -0.4
UBXN1-216ENST00000533908 HIST1H1AQ02539 215 aaPredicted RBP12.57□□□□□ -0.4
UBXN1-216ENST00000533908 KIR3DS1Q14943 382 aa12.57□□□□□ -0.4
UBXN1-216ENST00000533908 PSG3Q16557 428 aa12.57□□□□□ -0.4
UBXN1-216ENST00000533908 HIGD1AQ9Y241 93 aa12.57□□□□□ -0.4
UBXN1-216ENST00000533908 H3BMQ9 156 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 MRPS12O15235 138 aaKnown RBP12.56□□□□□ -0.4
UBXN1-216ENST00000533908 HYPMO75409 117 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 ADAP1O75689 374 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 RPL7P18124 248 aaKnown RBP12.56□□□□□ -0.4
UBXN1-216ENST00000533908 FAUP35544 74 aaKnown RBP12.56□□□□□ -0.4
UBXN1-216ENST00000533908 CCL18P55774 89 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 TAS2R60P59551 318 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 PLP1P60201 277 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 POLR2GP62487 172 aaKnown RBP eCLIP12.56□□□□□ -0.4
UBXN1-216ENST00000533908 TOMM5Q8N4H5 51 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 MAPKAPK5-AS1Q8N8E1 139 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 MCFD2Q8NI22 146 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 BCL7BQ9BQE9 202 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 KRTAP1-5Q9BYS1 174 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 V9GYH0 126 aa12.56□□□□□ -0.4
UBXN1-216ENST00000533908 A0A087X0K7 114 aa12.55□□□□□ -0.4
UBXN1-216ENST00000533908 SMCO3A2RU48 225 aa12.55□□□□□ -0.4
UBXN1-216ENST00000533908 OR5G3P0C626 314 aa12.55□□□□□ -0.4
UBXN1-216ENST00000533908 LINC00869P0C866 280 aa12.55□□□□□ -0.4
UBXN1-216ENST00000533908 RAP2BP61225 183 aa12.55□□□□□ -0.4
UBXN1-216ENST00000533908 PYDC2Q56P42 97 aa12.55□□□□□ -0.4
UBXN1-216ENST00000533908 SSX7Q7RTT5 188 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms