RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 HAGHQ16775 308 aa11.2□□□□□ -0.62
CPSF1-208ENST00000532560 TMEM144Q7Z5S9 345 aa11.2□□□□□ -0.62
CPSF1-208ENST00000532560 CLRN3Q8NCR9 226 aa11.2□□□□□ -0.62
CPSF1-208ENST00000532560 MS4A6AQ9H2W1 248 aa11.2□□□□□ -0.62
CPSF1-208ENST00000532560 TREM1Q9NP99 234 aa11.2□□□□□ -0.62
CPSF1-208ENST00000532560 RABAC1Q9UI14 185 aa11.2□□□□□ -0.62
CPSF1-208ENST00000532560 UMAD1C9J7I0 102 aa11.19□□□□□ -0.62
CPSF1-208ENST00000532560 DNASE2O00115 360 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-208ENST00000532560 SPP1P10451 314 aa11.19□□□□□ -0.62
CPSF1-208ENST00000532560 ATF4P18848 351 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-208ENST00000532560 FAM122CQ6P4D5 195 aa11.19□□□□□ -0.62
CPSF1-208ENST00000532560 C16orf54Q6UWD8 224 aa11.19□□□□□ -0.62
CPSF1-208ENST00000532560 OR10P1Q8NGE3 313 aa11.19□□□□□ -0.62
CPSF1-208ENST00000532560 GLMPQ8WWB7 406 aa11.19□□□□□ -0.62
CPSF1-208ENST00000532560 ZMAT4Q9H898 229 aa11.19□□□□□ -0.62
CPSF1-208ENST00000532560 IGKV3-7A0A075B6H7 116 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 SMCO3A2RU48 225 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 HELTA6NFD8 242 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 BUB3O43684 328 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 H2AFB1P0C5Y9 115 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 TFPI2P48307 235 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 CMC4P56277 68 aaPredicted RBP11.18□□□□□ -0.62
CPSF1-208ENST00000532560 LYZP61626 148 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 RPL11P62913 178 aaKnown RBP11.18□□□□□ -0.62
CPSF1-208ENST00000532560 PEA15Q15121 130 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 GBGT1Q8N5D6 347 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 RCHY1Q96PM5 261 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 SPATA25Q9BR10 227 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 PBDC1Q9BVG4 233 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 GGACTQ9BVM4 153 aa11.18□□□□□ -0.62
CPSF1-208ENST00000532560 Q6ZRG5 221 aa11.17□□□□□ -0.62
CPSF1-208ENST00000532560 GGTLC1Q9BX51 225 aa11.17□□□□□ -0.62
CPSF1-208ENST00000532560 HRH4Q9H3N8 390 aa11.17□□□□□ -0.62
CPSF1-208ENST00000532560 LYRM2Q9NU23 88 aaPredicted RBP11.17□□□□□ -0.62
CPSF1-208ENST00000532560 LOC102724200A0A096LPH7 203 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-208ENST00000532560 FLI1Q01543 452 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-208ENST00000532560 EWSR1Q01844 656 aaKnown RBP eCLIP11.16□□□□□ -0.62
CPSF1-208ENST00000532560 ARL16Q0P5N6 197 aa11.16□□□□□ -0.62
CPSF1-208ENST00000532560 DPPA3Q6W0C5 159 aa11.16□□□□□ -0.62
CPSF1-208ENST00000532560 STXBP6Q8NFX7 210 aa11.16□□□□□ -0.62
CPSF1-208ENST00000532560 DCANP1Q8TF63 244 aa11.16□□□□□ -0.62
CPSF1-208ENST00000532560 GNPNAT1Q96EK6 184 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-208ENST00000532560 MAP6D1Q9H9H5 199 aa11.16□□□□□ -0.62
CPSF1-208ENST00000532560 SLC45A2Q9UMX9 530 aa11.16□□□□□ -0.62
CPSF1-208ENST00000532560 K7EQG2 157 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 CAMLGP49069 296 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 C1orf194Q5T5A4 169 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 ATRAIDQ6UW56 229 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 SIGLEC15Q6ZMC9 328 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 CYP2G1PQ6ZSU1 146 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 WFDC3Q8IUB2 231 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 WWC2-AS2Q96NR7 200 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 NPVFQ9HCQ7 196 aa11.15□□□□□ -0.62
CPSF1-208ENST00000532560 HUWE1Q7Z6Z7 4374 aaKnown RBP11.14□□□□□ -0.63
CPSF1-208ENST00000532560 FAM24AA6NFZ4 105 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 ADCYAP1P18509 176 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 SULT1A1P50225 295 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 SELENOTP62341 195 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 SLC38A11Q08AI6 406 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 TEPPQ6URK8 271 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 TMEM182Q6ZP80 229 aaPredicted RBP11.14□□□□□ -0.63
CPSF1-208ENST00000532560 APRG1Q8IVJ8 170 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 FAM24BQ8N5W8 94 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 STPG3Q8N7X2 389 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 SMIM3Q9BZL3 60 aa11.14□□□□□ -0.63
CPSF1-208ENST00000532560 IGSF23A1L1A6 192 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 CST7O76096 145 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 SFTA3P0C7M3 94 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 GATA2P23769 480 aaPredicted RBP11.13□□□□□ -0.63
CPSF1-208ENST00000532560 RAB2AP61019 212 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 STX12Q86Y82 276 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 TMEM252Q8N6L7 170 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 WFDC1Q9HC57 220 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 NRN1Q9NPD7 142 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 STAB2Q8WWQ8 2551 aa11.13□□□□□ -0.63
CPSF1-208ENST00000532560 KIR2DL5BA0A0G2JN68 375 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 KIR2DL5BA0A0G2JPC4 375 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 LINC00869P0C866 280 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 S100A7P31151 101 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 APOC4P55056 127 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 DEFB131AP59861 70 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 PLP1P60201 277 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 HBG1P69891 147 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 HBG2P69892 147 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 ZNF124Q15973 351 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 VWC2Q2TAL6 325 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 KIR2DL5AQ8N109 375 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 TMEM217Q8N7C4 229 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 KIR2DL5BQ8NHK3 375 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 TMEM147Q9BVK8 224 aa11.12□□□□□ -0.63
CPSF1-208ENST00000532560 SEPSECSQ9HD40 501 aaKnown RBP11.12□□□□□ -0.63
CPSF1-208ENST00000532560 TENM3Q9P273 2699 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 FAM74A7A6NL05 159 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 HBE1P02100 147 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 ORM2P19652 201 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 GUK1Q16774 197 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 FAM74A3Q4VXF1 159 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 SMUG1Q53HV7 270 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 OR1B1Q8NGR6 318 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 RETNQ9HD89 108 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 137.3 ms