RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	EBLN2	Q6P2I7	272 aa		7.01	□□□□□ -1.29
CHD7-208	ENST00000528280	PHLDA1	Q8WV24	401 aa	Predicted RBP	7.01	□□□□□ -1.29
CHD7-208	ENST00000528280	LINC00052	Q96N35	136 aa		7.01	□□□□□ -1.29
CHD7-208	ENST00000528280	HRH4	Q9H3N8	390 aa		7.01	□□□□□ -1.29
CHD7-208	ENST00000528280	IGKV1OR2-108	A0A075B7D4	117 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	SMCO3	A2RU48	225 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	ZNF98	A6NK75	572 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	ZNF705E	A8MWA4	302 aa	Predicted RBP	7	□□□□□ -1.29
CHD7-208	ENST00000528280	C11orf94	C9JXX5	98 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280		G3V3Q6	166 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280		H3BMM0	161 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	SMLR1	H3BR10	107 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280		L7N2F9	121 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	SSSCA1	O60232	199 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	HYPM	O75409	117 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	ORM2	P19652	201 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	PVALB	P20472	110 aa	Predicted RBP	7	□□□□□ -1.29
CHD7-208	ENST00000528280	VAMP2	P63027	116 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	RAB31	Q13636	194 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	PMS2P11	Q13670	270 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	LGALSL	Q3ZCW2	172 aa	Predicted RBP	7	□□□□□ -1.29
CHD7-208	ENST00000528280	TEPP	Q6URK8	271 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	TMEM14EP	Q6UXP3	125 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	FOXI2	Q6ZQN5	318 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	CYP2G1P	Q6ZSU1	146 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	C12orf45	Q8N5I9	185 aa	Predicted RBP	7	□□□□□ -1.29
CHD7-208	ENST00000528280	ZNF680	Q8NEM1	530 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	OR11H4	Q8NGC9	324 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	SEC22C	Q9BRL7	303 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	RPRM	Q9NS64	109 aa		7	□□□□□ -1.29
CHD7-208	ENST00000528280	SMIM9	A6NGZ8	99 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280		H3BP45	60 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	DEDD	O75618	318 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	SCGB1D2	O95969	90 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	GIG44	P09565	113 aa	Predicted RBP	6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	HLA-DRB4	P13762	266 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	PAX9	P55771	341 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	PLP1	P60201	277 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	RAB14	P61106	215 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	ACOT7L	Q6ZUV0	252 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	CSNK1G2-AS1	Q8NCQ2	148 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	C16orf92	Q96LL3	132 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	RSG1	Q9BU20	258 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	SAV1	Q9H4B6	383 aa	Predicted RBP	6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	MED9	Q9NWA0	146 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	HLA-DRB4	X5D2U9	266 aa		6.99	□□□□□ -1.29
CHD7-208	ENST00000528280	PLEC	Q15149	4684 aa	Known RBP	6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	TMEM189	A5PLL7	270 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	C5orf51	A6NDU8	294 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	PMS2P5	A8MQ11	134 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280		K7EPK0	472 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	GOSR2	O14653	212 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	MBP	P02686	304 aa	Predicted RBP	6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	METTL15P1	P0C7V9	234 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	RPL7	P18124	248 aa	Known RBP	6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	M6PR	P20645	277 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	EWSR1	Q01844	656 aa	Known RBP eCLIP	6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	OPCML	Q14982	345 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	GSG1L	Q6UXU4	331 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	C2CD4C	Q8TF44	421 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	C2orf50	Q96LR7	162 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	NEU1	Q99519	415 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	SLC25A22	Q9H936	323 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	HIGD1A	Q9Y241	93 aa		6.98	□□□□□ -1.29
CHD7-208	ENST00000528280	ELOA3C	A0A087WX78	387 aa	Predicted RBP	6.97	□□□□□ -1.29
CHD7-208	ENST00000528280		A0A0D9SG52	128 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	FAM25E	A8MYX2	175 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	SOCS3	O14543	225 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	DUSP14	O95147	198 aa	Known RBP	6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	LY6G6C	O95867	125 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	AMBP	P02760	352 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	OR5G3	P0C626	314 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	S100A11	P31949	105 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	CYCS	P99999	105 aa	Known RBP	6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	PSG9	Q00887	426 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	ZNF345	Q14585	488 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	ZNF546	Q86UE3	836 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280		Q8NAQ8	132 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	SHANK2-AS3	Q9BTD1	123 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	XCL2	Q9UBD3	114 aa		6.97	□□□□□ -1.29
CHD7-208	ENST00000528280	IGHV4-28	A0A0C4DH34	117 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	RLN2	P04090	185 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	LINC00869	P0C866	280 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	RBMY1A1	P0DJD3	496 aa	Known RBP	6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	RBMY1C	P0DJD4	496 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	GATA2	P23769	480 aa	Predicted RBP	6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	NANOS2	P60321	138 aa	Known RBP	6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	B2M	P61769	119 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	RBMY1F	Q15415	496 aa	Known RBP	6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	LGALS9C	Q6DKI2	356 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	TMEM182	Q6ZP80	229 aa	Predicted RBP	6.96	□□□□□ -1.3
CHD7-208	ENST00000528280		Q6ZRG5	221 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	SLC51B	Q86UW2	128 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	OR4B1	Q8NGF8	309 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	LRRC20	Q8TCA0	184 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	LINC00476	Q8WZB0	136 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	ARL6	Q9H0F7	186 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	SLC25A32	Q9H2D1	315 aa		6.96	□□□□□ -1.3
CHD7-208	ENST00000528280	CLEC5A	Q9NY25	188 aa		6.96	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms