RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 C9orf139Q6ZV77 190 aa16.08■□□□□ 0.16
VPS28-209ENST00000528142 OR10G8Q8NGN5 311 aa16.08■□□□□ 0.16
VPS28-209ENST00000528142 CCDC168Q8NDH2 2452 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 TRBV19A0A075B6N1 114 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 FAM223BA6NKX1 122 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 ATP5G2Q06055 141 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 CLEC19AQ6UXS0 136 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 FAM223AQ8IWN6 122 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 C5orf17Q8NAS9 161 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 IMMP2LQ96T52 175 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 OTORQ9NRC9 128 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 RNF24Q9Y225 148 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 ITPR3Q14573 2671 aa16.07■□□□□ 0.16
VPS28-209ENST00000528142 GGCTO75223 188 aaKnown RBP16.06■□□□□ 0.16
VPS28-209ENST00000528142 GCGP01275 180 aa16.06■□□□□ 0.16
VPS28-209ENST00000528142 OR4F17Q8NGA8 305 aa16.06■□□□□ 0.16
VPS28-209ENST00000528142 NOL4LQ96MY1 436 aaPredicted RBP16.06■□□□□ 0.16
VPS28-209ENST00000528142 ATP6V0BQ99437 205 aa16.06■□□□□ 0.16
VPS28-209ENST00000528142 KLF12Q9Y4X4 402 aa16.06■□□□□ 0.16
VPS28-209ENST00000528142 AKAP9Q99996 3911 aa16.06■□□□□ 0.16
VPS28-209ENST00000528142 OR5I1Q13606 314 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 TMEM183BQ1AE95 376 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 CYB5R2Q6BCY4 276 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 TOMM20LQ6UXN7 152 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 CIARTQ8N365 385 aaPredicted RBP16.05■□□□□ 0.16
VPS28-209ENST00000528142 C17orf77Q96MU5 243 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 ZFAND3Q9H8U3 227 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 TRAV34A0A0B4J273 112 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 H3BUA1 57 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 ISLRO14498 428 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 TGOLN2O43493 480 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 ATG101Q9BSB4 218 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 RABAC1Q9UI14 185 aa16.05■□□□□ 0.16
VPS28-209ENST00000528142 IGHV3-35A0A0C4DH35 117 aa16.04■□□□□ 0.16
VPS28-209ENST00000528142 AP4M1O00189 453 aa16.04■□□□□ 0.16
VPS28-209ENST00000528142 TRGV3P03979 118 aa16.04■□□□□ 0.16
VPS28-209ENST00000528142 FOXL1Q12952 345 aa16.04■□□□□ 0.16
VPS28-209ENST00000528142 BMPR1BO00238 502 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 TCRAP04437 139 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 EXOC3-AS1Q8N2X6 119 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 TMEM190Q8WZ59 177 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 ZNF580Q9UK33 172 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 FAM3BP58499 235 aaPredicted RBP16.03■□□□□ 0.16
VPS28-209ENST00000528142 KCNIP4Q6PIL6 250 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 SIGLEC15Q6ZMC9 328 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 LYPD1Q8N2G4 141 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 OR5R1Q8NH85 324 aa16.03■□□□□ 0.16
VPS28-209ENST00000528142 A0A1W2PPQ1 181 aa16.02■□□□□ 0.16
VPS28-209ENST00000528142 ERVFC1-1P60608 527 aa16.02■□□□□ 0.16
VPS28-209ENST00000528142 Q6YL49 198 aa16.02■□□□□ 0.16
VPS28-209ENST00000528142 BAGE2Q86Y30 109 aa16.02■□□□□ 0.16
VPS28-209ENST00000528142 BIN3Q9NQY0 253 aa16.02■□□□□ 0.16
VPS28-209ENST00000528142 V9GYV3 84 aa16.02■□□□□ 0.16
VPS28-209ENST00000528142 TRGC2P03986 189 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 CFHR3Q02985 330 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 SRD5A3Q9H8P0 318 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 GNB4Q9HAV0 340 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 OSTCQ9NRP0 149 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 IGHV3OR16-8A0A075B7F1 116 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 CLPSL1A2RUU4 121 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 SLC17A3O00476 420 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 PHOX2AO14813 284 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 IGLV1-40P01703 118 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 TYMSP04818 313 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 S100A9P06702 114 aaKnown RBP16.01■□□□□ 0.15
VPS28-209ENST00000528142 RPL7P18124 248 aaKnown RBP16.01■□□□□ 0.15
VPS28-209ENST00000528142 TPPP2P59282 170 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 PDE6HQ13956 83 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 USMG5Q96IX5 58 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 PRDM13Q9H4Q3 707 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 RPH3ALQ9UNE2 315 aa16.01■□□□□ 0.15
VPS28-209ENST00000528142 S100A7P31151 101 aa16■□□□□ 0.15
VPS28-209ENST00000528142 UBE2G1P62253 170 aa16■□□□□ 0.15
VPS28-209ENST00000528142 NHLRC2Q8NBF2 726 aa16■□□□□ 0.15
VPS28-209ENST00000528142 FMC1Q96HJ9 113 aa16■□□□□ 0.15
VPS28-209ENST00000528142 FOXC2Q99958 501 aa16■□□□□ 0.15
VPS28-209ENST00000528142 RNASE7Q9H1E1 156 aaKnown RBP16■□□□□ 0.15
VPS28-209ENST00000528142 IL36BQ9NZH7 164 aa16■□□□□ 0.15
VPS28-209ENST00000528142 TEX15Q9BXT5 2789 aa16■□□□□ 0.15
VPS28-209ENST00000528142 MGST1P10620 155 aaKnown RBP15.99■□□□□ 0.15
VPS28-209ENST00000528142 RPL15P61313 204 aaKnown RBP15.99■□□□□ 0.15
VPS28-209ENST00000528142 RELQ04864 619 aaPredicted RBP15.99■□□□□ 0.15
VPS28-209ENST00000528142 KLK15Q9H2R5 256 aa15.99■□□□□ 0.15
VPS28-209ENST00000528142 SAV1Q9H4B6 383 aaPredicted RBP15.99■□□□□ 0.15
VPS28-209ENST00000528142 SMAD5-AS1Q9Y6J3 95 aa15.99■□□□□ 0.15
VPS28-209ENST00000528142 CSPG4Q6UVK1 2322 aa15.99■□□□□ 0.15
VPS28-209ENST00000528142 CREBBPQ92793 2442 aa15.99■□□□□ 0.15
VPS28-209ENST00000528142 PPP5D1E7EU14 171 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 CMTM2Q8TAZ6 248 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 SMIM12Q96EX1 92 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 SGK494Q96LW2 274 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 GPR82Q96P67 336 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 VPREB3Q9UKI3 123 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 C5orf52A6NGY3 159 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 OR8I2Q8N0Y5 310 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 MLST8Q9BVC4 326 aa15.98■□□□□ 0.15
VPS28-209ENST00000528142 BUB3O43684 328 aa15.97■□□□□ 0.15
VPS28-209ENST00000528142 LTAP01374 205 aa15.97■□□□□ 0.15
VPS28-209ENST00000528142 IGLV2-11P01706 119 aa15.97■□□□□ 0.15
VPS28-209ENST00000528142 ZFHX3Q15911 3703 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms