RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 OR4D5Q8NGN0 318 aa16.53■□□□□ 0.24
CPSF1-202ENST00000527827 AZU1P20160 251 aa16.52■□□□□ 0.24
CPSF1-202ENST00000527827 GATA2P23769 480 aaPredicted RBP16.52■□□□□ 0.24
CPSF1-202ENST00000527827 TSPOP30536 169 aa16.52■□□□□ 0.24
CPSF1-202ENST00000527827 BAP18Q8IXM2 172 aa16.52■□□□□ 0.24
CPSF1-202ENST00000527827 OR1B1Q8NGR6 318 aa16.52■□□□□ 0.24
CPSF1-202ENST00000527827 DUXBA0A1W2PPF3 345 aa16.51■□□□□ 0.23
CPSF1-202ENST00000527827 ORM2P19652 201 aa16.51■□□□□ 0.23
CPSF1-202ENST00000527827 FCN2Q15485 313 aa16.51■□□□□ 0.23
CPSF1-202ENST00000527827 RNF182Q8N6D2 247 aa16.51■□□□□ 0.23
CPSF1-202ENST00000527827 GPR82Q96P67 336 aa16.51■□□□□ 0.23
CPSF1-202ENST00000527827 F5H768 121 aa16.5■□□□□ 0.23
CPSF1-202ENST00000527827 NUDT3O95989 172 aa16.5■□□□□ 0.23
CPSF1-202ENST00000527827 B2MP61769 119 aa16.5■□□□□ 0.23
CPSF1-202ENST00000527827 GPR141Q7Z602 305 aa16.5■□□□□ 0.23
CPSF1-202ENST00000527827 BPIFCQ8NFQ6 507 aa16.5■□□□□ 0.23
CPSF1-202ENST00000527827 TRAV12-2A0A075B6T6 113 aa16.49■□□□□ 0.23
CPSF1-202ENST00000527827 SLC25A6P12236 298 aa16.49■□□□□ 0.23
CPSF1-202ENST00000527827 MAPKAPK5-AS1Q8N8E1 139 aa16.49■□□□□ 0.23
CPSF1-202ENST00000527827 TMEM147Q9BVK8 224 aa16.49■□□□□ 0.23
CPSF1-202ENST00000527827 RSL24D1Q9UHA3 163 aaKnown RBP16.49■□□□□ 0.23
CPSF1-202ENST00000527827 LINC00588Q9Y4M8 146 aa16.49■□□□□ 0.23
CPSF1-202ENST00000527827 PIGBOS1A0A0B4J2F0 54 aa16.48■□□□□ 0.23
CPSF1-202ENST00000527827 LRTM2Q8N967 370 aa16.48■□□□□ 0.23
CPSF1-202ENST00000527827 DYNC2LI1Q8TCX1 351 aa16.48■□□□□ 0.23
CPSF1-202ENST00000527827 SLC25A39Q9BZJ4 359 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-202ENST00000527827 H3BRN7 92 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 BOLA2-SMG1P6H3BVE0 249 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 MED6O75586 246 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 ATP5G1P05496 136 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 ATP5G3P48201 142 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 FGL1Q08830 312 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 TMEM128Q5BJH2 165 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 TMED4Q7Z7H5 227 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 CIB3Q96Q77 187 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-202ENST00000527827 SOSTQ9BQB4 213 aa16.47■□□□□ 0.23
CPSF1-202ENST00000527827 CCDC59Q9P031 241 aaKnown RBP16.47■□□□□ 0.23
CPSF1-202ENST00000527827 CBY3A6NI87 242 aa16.46■□□□□ 0.23
CPSF1-202ENST00000527827 WRBO00258 174 aa16.46■□□□□ 0.23
CPSF1-202ENST00000527827 SYNGR2O43760 224 aa16.46■□□□□ 0.23
CPSF1-202ENST00000527827 CCL18P55774 89 aa16.46■□□□□ 0.23
CPSF1-202ENST00000527827 RPP30P78346 268 aaKnown RBP16.46■□□□□ 0.23
CPSF1-202ENST00000527827 ZNF738Q8NE65 137 aa16.46■□□□□ 0.23
CPSF1-202ENST00000527827 RNF141Q8WVD5 230 aa16.46■□□□□ 0.23
CPSF1-202ENST00000527827 APOBP04114 4563 aaKnown RBP16.45■□□□□ 0.22
CPSF1-202ENST00000527827 LINC01587Q99440 93 aa16.45■□□□□ 0.22
CPSF1-202ENST00000527827 S100A7P31151 101 aa16.44■□□□□ 0.22
CPSF1-202ENST00000527827 AKR1C1Q04828 323 aa16.44■□□□□ 0.22
CPSF1-202ENST00000527827 SPANXN5Q5MJ07 72 aa16.44■□□□□ 0.22
CPSF1-202ENST00000527827 ACOT7LQ6ZUV0 252 aa16.44■□□□□ 0.22
CPSF1-202ENST00000527827 SHANK2-AS3Q9BTD1 123 aa16.44■□□□□ 0.22
CPSF1-202ENST00000527827 H3BP45 60 aa16.43■□□□□ 0.22
CPSF1-202ENST00000527827 VAMP1P23763 118 aa16.43■□□□□ 0.22
CPSF1-202ENST00000527827 TAS2R60P59551 318 aa16.43■□□□□ 0.22
CPSF1-202ENST00000527827 HIST1H1AQ02539 215 aaPredicted RBP16.43■□□□□ 0.22
CPSF1-202ENST00000527827 TMEM144Q7Z5S9 345 aa16.43■□□□□ 0.22
CPSF1-202ENST00000527827 TMEM256Q8N2U0 113 aa16.43■□□□□ 0.22
CPSF1-202ENST00000527827 OR8A1Q8NGG7 326 aa16.43■□□□□ 0.22
CPSF1-202ENST00000527827 MRPS26Q9BYN8 205 aaKnown RBP16.43■□□□□ 0.22
CPSF1-202ENST00000527827 CXCL3P19876 107 aa16.42■□□□□ 0.22
CPSF1-202ENST00000527827 TNFSF8P32971 234 aa16.42■□□□□ 0.22
CPSF1-202ENST00000527827 RHOBP62745 196 aa16.42■□□□□ 0.22
CPSF1-202ENST00000527827 CYP2G1PQ6ZSU1 146 aa16.42■□□□□ 0.22
CPSF1-202ENST00000527827 FABP12A6NFH5 140 aa16.41■□□□□ 0.22
CPSF1-202ENST00000527827 PRB4P10163 310 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-202ENST00000527827 RPL7P18124 248 aaKnown RBP16.41■□□□□ 0.22
CPSF1-202ENST00000527827 SSX7Q7RTT5 188 aa16.41■□□□□ 0.22
CPSF1-202ENST00000527827 TRIM63Q969Q1 353 aa16.41■□□□□ 0.22
CPSF1-202ENST00000527827 C16orf74Q96GX8 76 aa16.41■□□□□ 0.22
CPSF1-202ENST00000527827 SLIRPQ9GZT3 109 aaKnown RBP16.41■□□□□ 0.22
CPSF1-202ENST00000527827 HIGD1AQ9Y241 93 aa16.41■□□□□ 0.22
CPSF1-202ENST00000527827 TIMM8BQ9Y5J9 83 aaPredicted RBP16.41■□□□□ 0.22
CPSF1-202ENST00000527827 DNAH5Q8TE73 4624 aa16.41■□□□□ 0.22
CPSF1-202ENST00000527827 A0A087X0K7 114 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 SFT2D2O95562 160 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 IL5P05113 134 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 HOXB5P09067 269 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 HTN1P15515 57 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 FAUP35544 74 aaKnown RBP16.4■□□□□ 0.22
CPSF1-202ENST00000527827 PLP1P60201 277 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 RAP2BP61225 183 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 PPP1R1AQ13522 171 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 CLINT1Q14677 625 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 PSG3Q16557 428 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 SPATA12Q7Z6I5 190 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 Q8N1X5 172 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 RAB2BQ8WUD1 216 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 KRTAP1-5Q9BYS1 174 aa16.4■□□□□ 0.22
CPSF1-202ENST00000527827 STRAPQ9Y3F4 350 aaKnown RBP16.4■□□□□ 0.22
CPSF1-202ENST00000527827 HYPMO75409 117 aa16.39■□□□□ 0.21
CPSF1-202ENST00000527827 RNASE8Q8TDE3 154 aaKnown RBP16.39■□□□□ 0.21
CPSF1-202ENST00000527827 UHRF2Q96PU4 802 aa16.39■□□□□ 0.21
CPSF1-202ENST00000527827 Q9H8V8 135 aa16.39■□□□□ 0.21
CPSF1-202ENST00000527827 NOP10Q9NPE3 64 aaKnown RBP16.39■□□□□ 0.21
CPSF1-202ENST00000527827 PPP1R14DQ9NXH3 145 aa16.39■□□□□ 0.21
CPSF1-202ENST00000527827 SMCO3A2RU48 225 aa16.38■□□□□ 0.21
CPSF1-202ENST00000527827 LINC00869P0C866 280 aa16.38■□□□□ 0.21
CPSF1-202ENST00000527827 PMS2P5A8MQ11 134 aa16.37■□□□□ 0.21
CPSF1-202ENST00000527827 ZNF493Q6ZR52 646 aa16.37■□□□□ 0.21
CPSF1-202ENST00000527827 TMEM263Q8WUH6 116 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms