RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 LIPFP07098 398 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 FOXA3P55318 350 aaPredicted RBP8.76□□□□□ -1.01
HDAC9-228ENST00000524023 Q6ZN92 141 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 Q71RC1 249 aaPredicted RBP8.76□□□□□ -1.01
HDAC9-228ENST00000524023 SHANK2-AS3Q9BTD1 123 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 SCNM1Q9BWG6 230 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 ABCA4P78363 2273 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 PTPRZ1P23471 2315 aaPredicted RBP8.76□□□□□ -1.01
HDAC9-228ENST00000524023 TRBV19A0A075B6N1 114 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 TRBV6-1A0A0K0K1D8 114 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 K7ENP7 123 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 DLEU1O43261 78 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 GRNP28799 593 aaKnown RBP8.76□□□□□ -1.01
HDAC9-228ENST00000524023 Q56UQ5 140 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 COL5A1-AS1Q5SY13 56 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 C16orf54Q6UWD8 224 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 BPIFA4PQ86YQ2 179 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 KIR3DL3Q8N743 410 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 ARHGAP32A7KAX9 2087 aa8.76□□□□□ -1.01
HDAC9-228ENST00000524023 TRAV9-2A0A087WT02 112 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 FAM90A27PA6NNH2 459 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 ZNF785A8K8V0 405 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 H3BRN7 92 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 M0QZ24 198 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 HNRNPA3P51991 378 aaKnown RBP8.75□□□□□ -1.01
HDAC9-228ENST00000524023 FAM120AOSQ5T036 256 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 C17orf77Q96MU5 243 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 CLEC5AQ9NY25 188 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 PTPRQQ9UMZ3 2332 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 LOC102724200A0A096LPH7 203 aaPredicted RBP8.75□□□□□ -1.01
HDAC9-228ENST00000524023 SH2D7A6NKC9 451 aaPredicted RBP8.75□□□□□ -1.01
HDAC9-228ENST00000524023 OVOL3O00110 214 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 HAX1O00165 279 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 CHEK1O14757 476 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 NBR2O15453 112 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 APOHP02749 345 aaPredicted RBP8.75□□□□□ -1.01
HDAC9-228ENST00000524023 HTR1DP28221 377 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 GAGE1Q13065 139 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 SPATA12Q7Z6I5 190 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 ZNF491Q8N8L2 437 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 OR4F17Q8NGA8 305 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 TMEM190Q8WZ59 177 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 CFHR4Q92496 578 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 CHCHD1Q96BP2 118 aaKnown RBP8.75□□□□□ -1.01
HDAC9-228ENST00000524023 NDFIP1Q9BT67 221 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 DPM3Q9P2X0 92 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 RNF24Q9Y225 148 aa8.75□□□□□ -1.01
HDAC9-228ENST00000524023 RELNP78509 3460 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 TFPI2P48307 235 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 ARF6P62330 175 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 FOXC1Q12948 553 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 FBXL19-AS1Q494R0 122 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 SIGLEC15Q6ZMC9 328 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 TMEM75Q8N9X5 138 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 OR11H6Q8NGC7 330 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 RNF125Q96EQ8 232 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 ZC2HC1AQ96GY0 325 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 TMEM70Q9BUB7 260 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 LAMTOR2Q9Y2Q5 125 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 HILPDAQ9Y5L2 63 aa8.74□□□□□ -1.01
HDAC9-228ENST00000524023 HRNRQ86YZ3 2850 aaPredicted RBP8.73□□□□□ -1.01
HDAC9-228ENST00000524023 IGHV1-24A0A0C4DH33 117 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 C20orf202A1L168 122 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 LY6HO94772 140 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 NDUFA3O95167 84 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 HLA-DRB1P01911 266 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 IL4P05112 153 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 LYPD1Q8N2G4 141 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 NPBQ8NG41 125 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 IGFBPL1Q8WX77 278 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 ZFP30Q9Y2G7 519 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 GOLT1BQ9Y3E0 138 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 MRPS12O15235 138 aaKnown RBP8.73□□□□□ -1.01
HDAC9-228ENST00000524023 CRXO43186 299 aaPredicted RBP8.73□□□□□ -1.01
HDAC9-228ENST00000524023 LINC00614P0C842 121 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 IGLL1P15814 213 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 TSPOP30536 169 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 KLF17Q5JT82 389 aaPredicted RBP8.73□□□□□ -1.01
HDAC9-228ENST00000524023 STPG4Q8N801 248 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 PSG8Q9UQ74 426 aa8.73□□□□□ -1.01
HDAC9-228ENST00000524023 WI2-2373I1.2A0A1W2PRP0 233 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 NPSP0C0P6 89 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 FOSL1P15407 271 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 FCGR2BP31994 310 aaPredicted RBP8.72□□□□□ -1.01
HDAC9-228ENST00000524023 KLRD1Q13241 179 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 ZNF414Q96IQ9 312 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 ASCL2Q99929 193 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 C1RLQ9NZP8 487 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 MRPS16Q9Y3D3 137 aaKnown RBP8.72□□□□□ -1.01
HDAC9-228ENST00000524023 SPTA1P02549 2419 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 CSMD1Q96PZ7 3565 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.72□□□□□ -1.01
HDAC9-228ENST00000524023 A0A1B0GUT8 65 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 K7EQM0 130 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 LEPROTL1O95214 131 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 CEACAM3P40198 252 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 PSG3Q16557 428 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 FBLN7Q53RD9 439 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 LINC00173Q6ZV60 143 aa8.72□□□□□ -1.01
HDAC9-228ENST00000524023 RAB1BQ9H0U4 201 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms