RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 OR8I2Q8N0Y5 310 aa12.27□□□□□ -0.44
LSM1-204ENST00000522515 TECRQ9NZ01 308 aaKnown RBP12.27□□□□□ -0.44
LSM1-204ENST00000522515 OXLD1Q5BKU9 147 aa12.26□□□□□ -0.45
LSM1-204ENST00000522515 FAM90A2PQ658T7 463 aa12.26□□□□□ -0.45
LSM1-204ENST00000522515 EIF5AL1Q6IS14 154 aaKnown RBP12.26□□□□□ -0.45
LSM1-204ENST00000522515 TCF24Q7RTU0 167 aa12.26□□□□□ -0.45
LSM1-204ENST00000522515 MRPL32Q9BYC8 188 aaKnown RBP12.26□□□□□ -0.45
LSM1-204ENST00000522515 A0A1W2PPV4 95 aa12.26□□□□□ -0.45
LSM1-204ENST00000522515 IZUMO1RA6ND01 250 aa12.26□□□□□ -0.45
LSM1-204ENST00000522515 SIGLEC15Q6ZMC9 328 aa12.26□□□□□ -0.45
LSM1-204ENST00000522515 TMEM61Q8N0U2 210 aa12.26□□□□□ -0.45
LSM1-204ENST00000522515 NOTCH3Q9UM47 2321 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 IGKV3-7A0A075B6H7 116 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 UMAD1C9J7I0 102 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 CDC34P49427 236 aaPredicted RBP12.25□□□□□ -0.45
LSM1-204ENST00000522515 FHITP49789 147 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 ZNF726P1Q15940 193 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 ALKAL2Q6UX46 152 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 SSX7Q7RTT5 188 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 RAB24Q969Q5 203 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 FAM167A-AS1Q96KT0 104 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 SLC25A2Q9BXI2 301 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 SMAD5-AS1Q9Y6J3 95 aa12.25□□□□□ -0.45
LSM1-204ENST00000522515 MRPS12O15235 138 aaKnown RBP12.24□□□□□ -0.45
LSM1-204ENST00000522515 HMGB3O15347 200 aaKnown RBP12.24□□□□□ -0.45
LSM1-204ENST00000522515 WIPF1O43516 503 aa12.24□□□□□ -0.45
LSM1-204ENST00000522515 RPL11P62913 178 aaKnown RBP12.24□□□□□ -0.45
LSM1-204ENST00000522515 FAM74A1Q5RGS3 127 aa12.24□□□□□ -0.45
LSM1-204ENST00000522515 RBPMS2Q6ZRY4 209 aaKnown RBP12.24□□□□□ -0.45
LSM1-204ENST00000522515 PHYHIPLQ96FC7 376 aa12.24□□□□□ -0.45
LSM1-204ENST00000522515 ACTR3CQ9C0K3 210 aaPredicted RBP12.24□□□□□ -0.45
LSM1-204ENST00000522515 RNF24Q9Y225 148 aa12.24□□□□□ -0.45
LSM1-204ENST00000522515 HELTA6NFD8 242 aa12.23□□□□□ -0.45
LSM1-204ENST00000522515 CD5P06127 495 aa12.23□□□□□ -0.45
LSM1-204ENST00000522515 RPL7P18124 248 aaKnown RBP12.23□□□□□ -0.45
LSM1-204ENST00000522515 BPIFA4PQ86YQ2 179 aa12.23□□□□□ -0.45
LSM1-204ENST00000522515 C17orf77Q96MU5 243 aa12.23□□□□□ -0.45
LSM1-204ENST00000522515 GPR82Q96P67 336 aa12.23□□□□□ -0.45
LSM1-204ENST00000522515 G3V4G9 280 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 TSPAN4O14817 238 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 SNRPCP09234 159 aaKnown RBP12.22□□□□□ -0.45
LSM1-204ENST00000522515 PYYP10082 97 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 GP9P14770 177 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 GALR1P47211 349 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 SULT1A2P50226 295 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 GBGT1Q8N5D6 347 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 OR2K2Q8NGT1 345 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 FAM213BQ8TBF2 198 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 ZNF503Q96F45 646 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 GPR61Q9BZJ8 451 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 CMYA5Q8N3K9 4069 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 TRAV25A0A0B4J276 109 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 CTXND1A0A1B0GTU2 59 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 ZNF785A8K8V0 405 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 OR7C2O60412 319 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 STAG3L2P0CL84 134 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 STAG3L3P0CL85 134 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 TAS2R45P59539 299 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 LCN12Q6JVE5 192 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 STXBP6Q8NFX7 210 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 MS4A6AQ9H2W1 248 aa12.22□□□□□ -0.45
LSM1-204ENST00000522515 H3BQ15 152 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 TFPI2P48307 235 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 RAB5CP51148 216 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 GUCA2BQ16661 112 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 KHDC3LQ587J8 217 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 SAMD5Q5TGI4 173 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 TEX261Q6UWH6 196 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 OR51M1Q9H341 326 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 NRN1Q9NPD7 142 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 TMEM14CQ9P0S9 112 aa12.21□□□□□ -0.46
LSM1-204ENST00000522515 H3BTX0 84 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 OR10J4P0C629 311 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 IGLC2P0DOY2 106 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 ATF4P18848 351 aaPredicted RBP12.2□□□□□ -0.46
LSM1-204ENST00000522515 LCN15Q6UWW0 184 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 DPPA3Q6W0C5 159 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 WFDC3Q8IUB2 231 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 DCANP1Q8TF63 244 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 SPAG8Q99932 426 aaPredicted RBP12.2□□□□□ -0.46
LSM1-204ENST00000522515 PAXXQ9BUH6 204 aa12.2□□□□□ -0.46
LSM1-204ENST00000522515 A0A087X0K7 114 aa12.19□□□□□ -0.46
LSM1-204ENST00000522515 ARL14EPLP0DKL9 152 aa12.19□□□□□ -0.46
LSM1-204ENST00000522515 ZNF680Q8NEM1 530 aa12.19□□□□□ -0.46
LSM1-204ENST00000522515 RNF141Q8WVD5 230 aa12.19□□□□□ -0.46
LSM1-204ENST00000522515 FXYD5Q96DB9 178 aa12.19□□□□□ -0.46
LSM1-204ENST00000522515 HRH4Q9H3N8 390 aa12.19□□□□□ -0.46
LSM1-204ENST00000522515 ZNF586Q9NXT0 402 aa12.19□□□□□ -0.46
LSM1-204ENST00000522515 MAP1LC3B2A6NCE7 125 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 DNASE2O00115 360 aaPredicted RBP12.18□□□□□ -0.46
LSM1-204ENST00000522515 HIST1H1EP10412 219 aaKnown RBP12.18□□□□□ -0.46
LSM1-204ENST00000522515 FGF8P55075 233 aaPredicted RBP12.18□□□□□ -0.46
LSM1-204ENST00000522515 PAFAH1B2P68402 229 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 PQLC2Q6ZP29 291 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 MAP1LC3BQ9GZQ8 125 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 ZNF256Q9Y2P7 627 aaPredicted RBP12.18□□□□□ -0.46
LSM1-204ENST00000522515 K7EQG2 157 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 KRTAP10-11P60412 298 aa12.18□□□□□ -0.46
LSM1-204ENST00000522515 UBE2L3P68036 154 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms