RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 LRRIQ4A6NIV6 560 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 HMGB1P09429 215 aaKnown RBP-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 CXCL2P19875 107 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 C18orf21Q32NC0 220 aaPredicted RBP-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 FAM78BQ5VT40 261 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 LPCAT3Q6P1A2 487 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 SSX9Q7RTT3 188 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 SREK1IP1Q8N9Q2 155 aaPredicted RBP-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 ROPN1LQ96C74 230 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 RBP7Q96R05 134 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 MED10Q9BTT4 135 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 AUNIPQ9H7T9 357 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 GEMIN7Q9H840 131 aaKnown RBP-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 NXT1Q9UKK6 140 aaKnown RBP-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 DMXL2Q8TDJ6 3036 aa-4.1□□□□□ -3.07
RNU6-539P-201ENST00000516665 TRAV27A0A087WT01 109 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 H0Y980 276 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 MKRN2OSH3BPM6 223 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 FADS2O95864 444 aaKnown RBP-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 PYYP10082 97 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 KCNE1P15382 129 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 CDC42P60953 191 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 GPM6BQ13491 265 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 ANKRD36BP1Q96IX9 119 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 LZTFL1Q9NQ48 299 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 PARVAQ9NVD7 372 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 ADAMTS12P58397 1594 aa-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 MYO5AQ9Y4I1 1855 aaKnown RBP-4.11□□□□□ -3.07
RNU6-539P-201ENST00000516665 SPENQ96T58 3664 aaKnown RBP-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 TRBV10-3A0A0K0K1G6 114 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 GOLGA6L7A0A1B0GV03 622 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 DUXBA0A1W2PPF3 345 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 CXCL3P19876 107 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 SULT1A1P50225 295 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 GUK1Q16774 197 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 CCDC184Q52MB2 194 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 TMEM53Q6P2H8 277 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 ULK3Q6PHR2 472 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 AGR3Q8TD06 166 aa-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 MRPL36Q9P0J6 103 aaKnown RBP-4.12□□□□□ -3.07
RNU6-539P-201ENST00000516665 TMEM14DPA8MWL7 114 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 K7EP34 96 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 IGF2P01344 180 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 CCL1P22362 96 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 ANP32AP39687 249 aaKnown RBP-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 RAB11BQ15907 218 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 S100A7AQ86SG5 101 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 C9orf62Q8N4C0 152 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 NIPSNAP1Q9BPW8 284 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 LINC00467Q9BRT7 94 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 PRADC1Q9BSG0 188 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 TRANK1O15050 2925 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 AKAP11Q9UKA4 1901 aa-4.13□□□□□ -3.07
RNU6-539P-201ENST00000516665 METTL15A6NJ78 407 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 M0R036 132 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 NDUFS6O75380 124 aaKnown RBP-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 MT1BP07438 61 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 PSMD7P51665 324 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 H3F3AP84243 136 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 BOD1L2Q8IYS8 172 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 UBL4BQ8N7F7 174 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 OR10D3Q8NH80 312 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 BATF3Q9NR55 127 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 GCNT4Q9P109 453 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 V9GYY9 64 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 ANK1P16157 1881 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 PTPN23Q9H3S7 1636 aa-4.14□□□□□ -3.07
RNU6-539P-201ENST00000516665 TRRAPQ9Y4A5 3859 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 BICDL2A1A5D9 508 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 AKR1D1P51857 326 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 TAS2R41P59536 307 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 NEDD8Q15843 81 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 C5orf46Q6UWT4 87 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 CENPQQ7L2Z9 268 aaPredicted RBP-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 FAM81AQ8TBF8 368 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 KLK6Q92876 244 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 POP5Q969H6 163 aaKnown RBP-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 COA4Q9NYJ1 87 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 PXMP4Q9Y6I8 212 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 ZFHX3Q15911 3703 aa-4.15□□□□□ -3.07
RNU6-539P-201ENST00000516665 PAPPAQ13219 1627 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 OR4C46A6NHA9 309 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 A8MWV9 139 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 C17orf112F2Z3M2 114 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 H0YCG3 227 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 H0YGG7 62 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 ACYP2P14621 99 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 CFL1P23528 166 aaKnown RBP-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 PSMD4P55036 377 aaKnown RBP-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 VSNL1P62760 191 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 SYCP1Q15431 976 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 GRPEL2Q8TAA5 225 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 TMEM141Q96I45 108 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 HIST1H2BLQ99880 126 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 TMEM208Q9BTX3 173 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 MROQ9BYG7 248 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 TRIM4Q9C037 500 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 WDR61Q9GZS3 305 aaKnown RBP-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 IFT46Q9NQC8 304 aa-4.16□□□□□ -3.08
RNU6-539P-201ENST00000516665 COMMD9Q9P000 198 aa-4.16□□□□□ -3.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms