RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 S100A7AQ86SG5 101 aa12.55□□□□□ -0.4
DDX41-217ENST00000515562 PMS2P5A8MQ11 134 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 FNDC10F2Z333 226 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 H3BRN7 92 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 LINC00869P0C866 280 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 IAH1Q2TAA2 248 aaPredicted RBP12.54□□□□□ -0.4
DDX41-217ENST00000515562 TMEM14EPQ6UXP3 125 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 MITD1Q8WV92 249 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 C20orf173Q96LM9 149 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 SHANK2-AS3Q9BTD1 123 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 SCRT1Q9BWW7 348 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 SLC25A39Q9BZJ4 359 aaPredicted RBP12.54□□□□□ -0.4
DDX41-217ENST00000515562 HIGD1AQ9Y241 93 aa12.54□□□□□ -0.4
DDX41-217ENST00000515562 VPS13DQ5THJ4 4388 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 A8MTW9 85 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 TSC22D2O75157 780 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 HYPMO75409 117 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 SCGB1D2O95969 90 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 RPL7P18124 248 aaKnown RBP12.53□□□□□ -0.4
DDX41-217ENST00000515562 EMP1P54849 157 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 TAS2R30P59541 319 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 PLP1P60201 277 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 GSG1LQ6UXU4 331 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 OR10P1Q8NGE3 313 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 NDUFAF3Q9BU61 184 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 MGAT4CQ9UBM8 478 aa12.53□□□□□ -0.4
DDX41-217ENST00000515562 HBE1P02100 147 aa12.52□□□□□ -0.41
DDX41-217ENST00000515562 METTL15P1P0C7V9 234 aa12.52□□□□□ -0.41
DDX41-217ENST00000515562 RRAS2P62070 204 aaPredicted RBP12.52□□□□□ -0.41
DDX41-217ENST00000515562 ZBTB8BQ8NAP8 495 aaPredicted RBP12.52□□□□□ -0.41
DDX41-217ENST00000515562 C17orf77Q96MU5 243 aa12.52□□□□□ -0.41
DDX41-217ENST00000515562 C20orf85Q9H1P6 137 aa12.52□□□□□ -0.41
DDX41-217ENST00000515562 NPVFQ9HCQ7 196 aa12.52□□□□□ -0.41
DDX41-217ENST00000515562 RNF24Q9Y225 148 aa12.52□□□□□ -0.41
DDX41-217ENST00000515562 DNAH6Q9C0G6 4158 aa12.52□□□□□ -0.41
DDX41-217ENST00000515562 K7EPK0 472 aa12.51□□□□□ -0.41
DDX41-217ENST00000515562 DUSP14O95147 198 aaKnown RBP12.51□□□□□ -0.41
DDX41-217ENST00000515562 OR5G3P0C626 314 aa12.51□□□□□ -0.41
DDX41-217ENST00000515562 TEPPQ6URK8 271 aa12.51□□□□□ -0.41
DDX41-217ENST00000515562 DKK2Q9UBU2 259 aa12.51□□□□□ -0.41
DDX41-217ENST00000515562 RCL1Q9Y2P8 373 aaKnown RBP12.51□□□□□ -0.41
DDX41-217ENST00000515562 LOC102723971A0A1B0GUV8 181 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 CCNKO75909 580 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 P0DMU3 169 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 FAM231AP0DMU4 169 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 FAM231CP0DMU5 169 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 CNN1P51911 297 aaKnown RBP12.5□□□□□ -0.41
DDX41-217ENST00000515562 FGL1Q08830 312 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 RRN3P1Q2M238 152 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 PXDC1Q5TGL8 231 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 FAM222AQ5U5X8 452 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 AMTNQ6UX39 209 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 ZNF546Q86UE3 836 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 C1orf158Q8N1D5 194 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 IGF2BP2-AS1Q96M15 143 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 NIPSNAP3BQ9BS92 247 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 TMEM208Q9BTX3 173 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 NDUFA13Q9P0J0 144 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 GSKIPQ9P0R6 139 aa12.5□□□□□ -0.41
DDX41-217ENST00000515562 A0A087X0K7 114 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 TRAV8-2A0A0B4J237 113 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 LYRM1O43325 122 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 INSP01308 110 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 ZNF846Q147U1 533 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 RNF182Q8N6D2 247 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 ZNF738Q8NE65 137 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 FAM210BQ96KR6 192 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 UHRF2Q96PU4 802 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 GGACTQ9BVM4 153 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 ARL6Q9H0F7 186 aa12.49□□□□□ -0.41
DDX41-217ENST00000515562 DNAH10Q8IVF4 4471 aa12.48□□□□□ -0.41
DDX41-217ENST00000515562 SLC38A11Q08AI6 406 aa12.48□□□□□ -0.41
DDX41-217ENST00000515562 OXA1LQ15070 435 aa12.48□□□□□ -0.41
DDX41-217ENST00000515562 OR11H7Q8NGC8 314 aa12.48□□□□□ -0.41
DDX41-217ENST00000515562 ARV1Q9H2C2 271 aa12.48□□□□□ -0.41
DDX41-217ENST00000515562 YTHDF2Q9Y5A9 579 aaKnown RBP12.48□□□□□ -0.41
DDX41-217ENST00000515562 C7orf66A4D0T2 115 aa12.47□□□□□ -0.41
DDX41-217ENST00000515562 L7N2F9 121 aa12.47□□□□□ -0.41
DDX41-217ENST00000515562 GOSR2O14653 212 aa12.47□□□□□ -0.41
DDX41-217ENST00000515562 PLA2G10O15496 165 aa12.47□□□□□ -0.41
DDX41-217ENST00000515562 MBPP02686 304 aaPredicted RBP12.47□□□□□ -0.41
DDX41-217ENST00000515562 VAMP2P63027 116 aa12.47□□□□□ -0.41
DDX41-217ENST00000515562 SPINK13Q1W4C9 94 aa12.47□□□□□ -0.41
DDX41-217ENST00000515562 IGFL4Q6B9Z1 124 aa12.47□□□□□ -0.41
DDX41-217ENST00000515562 M0R2Z0 102 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 TCRBP04435 133 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 CXCL2P19875 107 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 CXCL3P19876 107 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 B2MP61769 119 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 POM121L12Q8N7R1 296 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 LRRC20Q8TCA0 184 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 NUDT15Q9NV35 164 aa12.46□□□□□ -0.41
DDX41-217ENST00000515562 BOLA2-SMG1P6H3BVE0 249 aa12.45□□□□□ -0.42
DDX41-217ENST00000515562 CCSO14618 274 aa12.45□□□□□ -0.42
DDX41-217ENST00000515562 AGPAT2O15120 278 aa12.45□□□□□ -0.42
DDX41-217ENST00000515562 OR8A1Q8NGG7 326 aa12.45□□□□□ -0.42
DDX41-217ENST00000515562 ZNF431Q8TF32 576 aaPredicted RBP12.45□□□□□ -0.42
DDX41-217ENST00000515562 CCDC32Q9BV29 185 aa12.45□□□□□ -0.42
DDX41-217ENST00000515562 HECTD4Q9Y4D8 3996 aa12.44□□□□□ -0.42
DDX41-217ENST00000515562 TRAV6A0A075B6T7 132 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms