RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TBPP20226 339 aa2.57□□□□□ -2
NUP54-212ENST00000513248 BMI1P35226 326 aa2.57□□□□□ -2
NUP54-212ENST00000513248 SNCAP37840 140 aa2.57□□□□□ -2
NUP54-212ENST00000513248 INPP1P49441 399 aa2.57□□□□□ -2
NUP54-212ENST00000513248 SUB1P53999 127 aaKnown RBP eCLIP2.57□□□□□ -2
NUP54-212ENST00000513248 PIGPP57054 158 aa2.57□□□□□ -2
NUP54-212ENST00000513248 TAS2R19P59542 299 aa2.57□□□□□ -2
NUP54-212ENST00000513248 LYZP61626 148 aa2.57□□□□□ -2
NUP54-212ENST00000513248 ZNF45Q02386 682 aa2.57□□□□□ -2
NUP54-212ENST00000513248 SPINK9Q5DT21 86 aa2.57□□□□□ -2
NUP54-212ENST00000513248 CTRB2Q6GPI1 263 aa2.57□□□□□ -2
NUP54-212ENST00000513248 THOC7Q6I9Y2 204 aaKnown RBP2.57□□□□□ -2
NUP54-212ENST00000513248 C19orf35Q6ZS72 473 aa2.57□□□□□ -2
NUP54-212ENST00000513248 SBSPONQ8IVN8 264 aa2.57□□□□□ -2
NUP54-212ENST00000513248 OR10W1Q8NGF6 305 aa2.57□□□□□ -2
NUP54-212ENST00000513248 OR1L6Q8NGR2 347 aa2.57□□□□□ -2
NUP54-212ENST00000513248 OR2K2Q8NGT1 345 aa2.57□□□□□ -2
NUP54-212ENST00000513248 GPX8Q8TED1 209 aa2.57□□□□□ -2
NUP54-212ENST00000513248 MRGPRFQ96AM1 343 aa2.57□□□□□ -2
NUP54-212ENST00000513248 ISOC1Q96CN7 298 aa2.57□□□□□ -2
NUP54-212ENST00000513248 DIRAS2Q96HU8 199 aa2.57□□□□□ -2
NUP54-212ENST00000513248 NARS2Q96I59 477 aaKnown RBP2.57□□□□□ -2
NUP54-212ENST00000513248 NAA50Q9GZZ1 169 aaKnown RBP2.57□□□□□ -2
NUP54-212ENST00000513248 FXYD6Q9H0Q3 95 aa2.57□□□□□ -2
NUP54-212ENST00000513248 MCUBQ9NWR8 336 aa2.57□□□□□ -2
NUP54-212ENST00000513248 C21orf62Q9NYP8 219 aa2.57□□□□□ -2
NUP54-212ENST00000513248 DSCAML1Q8TD84 2053 aa2.57□□□□□ -2
NUP54-212ENST00000513248 TRRAPQ9Y4A5 3859 aa2.57□□□□□ -2
NUP54-212ENST00000513248 IGKV3-7A0A075B6H7 116 aa2.56□□□□□ -2
NUP54-212ENST00000513248 IGLV11-55A0A075B6I3 123 aa2.56□□□□□ -2
NUP54-212ENST00000513248 IGHV3OR16-8A0A075B7F1 116 aa2.56□□□□□ -2
NUP54-212ENST00000513248 IGHV3-49A0A0A0MS15 119 aa2.56□□□□□ -2
NUP54-212ENST00000513248 C3orf85A0A1B0GTC6 90 aa2.56□□□□□ -2
NUP54-212ENST00000513248 IZUMO1RA6ND01 250 aa2.56□□□□□ -2
NUP54-212ENST00000513248 CEBPZOSA8MTT3 80 aa2.56□□□□□ -2
NUP54-212ENST00000513248 E7EUB6 86 aa2.56□□□□□ -2
NUP54-212ENST00000513248 C3orf84H3BNL1 204 aa2.56□□□□□ -2
NUP54-212ENST00000513248 GABARAPH6UMI1 98 aa2.56□□□□□ -2
NUP54-212ENST00000513248 DNASE2O00115 360 aaPredicted RBP2.56□□□□□ -2
NUP54-212ENST00000513248 LGALS9O00182 355 aa2.56□□□□□ -2
NUP54-212ENST00000513248 TGOLN2O43493 480 aa2.56□□□□□ -2
NUP54-212ENST00000513248 MT-CO2P00403 227 aa2.56□□□□□ -2
NUP54-212ENST00000513248 IGHV3-48P01763 117 aa2.56□□□□□ -2
NUP54-212ENST00000513248 CRYGCP07315 174 aa2.56□□□□□ -2
NUP54-212ENST00000513248 CD7P09564 240 aa2.56□□□□□ -2
NUP54-212ENST00000513248 AKAIN1P0CW23 69 aa2.56□□□□□ -2
NUP54-212ENST00000513248 CBLN1P23435 193 aa2.56□□□□□ -2
NUP54-212ENST00000513248 PTBP1P26599 531 aaKnown RBP eCLIP2.56□□□□□ -2
NUP54-212ENST00000513248 S100A5P33763 92 aa2.56□□□□□ -2
NUP54-212ENST00000513248 FAUP35544 74 aaKnown RBP2.56□□□□□ -2
NUP54-212ENST00000513248 TFPI2P48307 235 aa2.56□□□□□ -2
NUP54-212ENST00000513248 HSPE1P61604 102 aaKnown RBP2.56□□□□□ -2
NUP54-212ENST00000513248 PAFAH1B2P68402 229 aa2.56□□□□□ -2
NUP54-212ENST00000513248 MRPS10P82664 201 aaKnown RBP2.56□□□□□ -2
NUP54-212ENST00000513248 EIF4EBP1Q13541 118 aaPredicted RBP2.56□□□□□ -2
NUP54-212ENST00000513248 POU2AF1Q16633 256 aa2.56□□□□□ -2
NUP54-212ENST00000513248 DEFB114Q30KQ6 69 aa2.56□□□□□ -2
NUP54-212ENST00000513248 SP6Q3SY56 376 aa2.56□□□□□ -2
NUP54-212ENST00000513248 PYDC2Q56P42 97 aa2.56□□□□□ -2
NUP54-212ENST00000513248 ZFAND6Q6FIF0 208 aa2.56□□□□□ -2
NUP54-212ENST00000513248 GPHB5Q86YW7 130 aa2.56□□□□□ -2
NUP54-212ENST00000513248 ARRDC1Q8N5I2 433 aa2.56□□□□□ -2
NUP54-212ENST00000513248 DEFB125Q8N687 156 aa2.56□□□□□ -2
NUP54-212ENST00000513248 GDPD1Q8N9F7 314 aa2.56□□□□□ -2
NUP54-212ENST00000513248 TMEM229BQ8NBD8 167 aa2.56□□□□□ -2
NUP54-212ENST00000513248 DUSP18Q8NEJ0 188 aa2.56□□□□□ -2
NUP54-212ENST00000513248 OR5B3Q8NH48 314 aa2.56□□□□□ -2
NUP54-212ENST00000513248 MCFD2Q8NI22 146 aa2.56□□□□□ -2
NUP54-212ENST00000513248 MUC7Q8TAX7 377 aa2.56□□□□□ -2
NUP54-212ENST00000513248 MARCH1Q8TCQ1 289 aa2.56□□□□□ -2
NUP54-212ENST00000513248 RAB2BQ8WUD1 216 aa2.56□□□□□ -2
NUP54-212ENST00000513248 CACNG8Q8WXS5 425 aa2.56□□□□□ -2
NUP54-212ENST00000513248 MARC2Q969Z3 335 aa2.56□□□□□ -2
NUP54-212ENST00000513248 TMEM230Q96A57 120 aa2.56□□□□□ -2
NUP54-212ENST00000513248 SCGB3A2Q96PL1 93 aa2.56□□□□□ -2
NUP54-212ENST00000513248 GINS3Q9BRX5 216 aa2.56□□□□□ -2
NUP54-212ENST00000513248 SPXQ9BT56 116 aa2.56□□□□□ -2
NUP54-212ENST00000513248 MRPL27Q9P0M9 148 aaKnown RBP2.56□□□□□ -2
NUP54-212ENST00000513248 RSL24D1Q9UHA3 163 aaKnown RBP2.56□□□□□ -2
NUP54-212ENST00000513248 SCP2D1Q9UJQ7 156 aa2.56□□□□□ -2
NUP54-212ENST00000513248 PAIP2BQ9ULR5 123 aaKnown RBP2.56□□□□□ -2
NUP54-212ENST00000513248 KCNIP3Q9Y2W7 256 aa2.56□□□□□ -2
NUP54-212ENST00000513248 F11RQ9Y624 299 aaKnown RBP2.56□□□□□ -2
NUP54-212ENST00000513248 PLXNB1O43157 2135 aa2.56□□□□□ -2
NUP54-212ENST00000513248 LOC102724200A0A096LPH7 203 aaPredicted RBP2.55□□□□□ -2
NUP54-212ENST00000513248 TRAV25A0A0B4J276 109 aa2.55□□□□□ -2
NUP54-212ENST00000513248 IGLC7A0M8Q6 106 aa2.55□□□□□ -2
NUP54-212ENST00000513248 FABP12A6NFH5 140 aa2.55□□□□□ -2
NUP54-212ENST00000513248 OR4C46A6NHA9 309 aa2.55□□□□□ -2
NUP54-212ENST00000513248 CORTO00230 105 aa2.55□□□□□ -2
NUP54-212ENST00000513248 B3GALNT1O75752 331 aa2.55□□□□□ -2
NUP54-212ENST00000513248 CTSDP07339 412 aaPredicted RBP2.55□□□□□ -2
NUP54-212ENST00000513248 ANXA3P12429 323 aa2.55□□□□□ -2
NUP54-212ENST00000513248 AKR1C4P17516 323 aa2.55□□□□□ -2
NUP54-212ENST00000513248 OPRK1P41145 380 aa2.55□□□□□ -2
NUP54-212ENST00000513248 ETV6P41212 452 aa2.55□□□□□ -2
NUP54-212ENST00000513248 RPL5P46777 297 aaKnown RBP2.55□□□□□ -2
NUP54-212ENST00000513248 EIF2B2P49770 351 aaKnown RBP2.55□□□□□ -2
NUP54-212ENST00000513248 APOC4P55056 127 aa2.55□□□□□ -2
NUP54-212ENST00000513248 TMBIM6P55061 237 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms