RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 ORM2P19652 201 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 SRIP30626 198 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 PAX8Q06710 450 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 KLRD1Q13241 179 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 CT83Q5H943 113 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 HCP5Q6MZN7 132 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 C5orf17Q8NAS9 161 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 NHLRC2Q8NBF2 726 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 FMC1Q96HJ9 113 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 ATG101Q9BSB4 218 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 HIF1ANQ9NWT6 349 aa12.71□□□□□ -0.38
SQSTM1-213ENST00000510187 WNK2Q9Y3S1 2297 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 IGHV3-72A0A0B4J1Y9 119 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 TEX22C9J3V5 150 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 EREGO14944 169 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 ZNF324O75467 553 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 IGHV3-48P01763 117 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 NBEAP1P0C6P0 100 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 RAB4AP20338 218 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 SLC35B1P78383 322 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 PPP1R27Q86WC6 154 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 GPR82Q96P67 336 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 VAMP8Q9BV40 100 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 ZNF492Q9P255 531 aa12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 TBL2Q9Y4P3 447 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-213ENST00000510187 TRAV34A0A0B4J273 112 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 A0A1W2PS18 150 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 M0QZK8 103 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 OR2J3O76001 311 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 TOMM40O96008 361 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 HOXB4P17483 251 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 AMTP48728 403 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 KLF5Q13887 457 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 NUP35Q8NFH5 326 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 OR11H6Q8NGC7 330 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 OR4B1Q8NGF8 309 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 TMEM68Q96MH6 324 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 MIEN1Q9BRT3 115 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 SNHG12Q9BXW3 62 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 FBXL7Q9UJT9 491 aa12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 SOX21Q9Y651 276 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-213ENST00000510187 PGPA6NDG6 321 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 CA1P00915 261 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 TGFAP01135 160 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 IGHV4-31P0DP07 118 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 NUTF2P61970 127 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 KIAA1644Q3SXP7 199 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 C19orf35Q6ZS72 473 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 MLST8Q9BVC4 326 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 NRN1Q9NPD7 142 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 TMEM14CQ9P0S9 112 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 HIGD1AQ9Y241 93 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 GATA3P23771 443 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 CNTFRP26992 372 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 GNG5P63218 68 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 RPEQ96AT9 228 aa12.68□□□□□ -0.38
SQSTM1-213ENST00000510187 A0A1B0GXF2 115 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 A0A1W2PRD5 423 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 A0A1W2PRF3 423 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 A0A1W2PRM7 423 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 LY6LH3BQJ8 138 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 LTAP01374 205 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 SLAQ13239 276 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 CIARTQ8N365 385 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 Q8N976 141 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 C18orf32Q8TCD1 76 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 VN1R17PQ8TDU5 208 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 BLNKQ8WV28 456 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 RCHY1Q96PM5 261 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 NEU1Q99519 415 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 RPP21Q9H633 154 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 OTORQ9NRC9 128 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 CREBBPQ92793 2442 aa12.67□□□□□ -0.38
SQSTM1-213ENST00000510187 NOTCH2Q04721 2471 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 NAV3Q8IVL0 2385 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 ODF3BA8MYP8 253 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 DIRC3C9JPN6 131 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 IGLC1P0CG04 106 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 CD33P20138 364 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 RUSC1-AS1Q66K80 236 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 SRSF12Q8WXF0 261 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 PRSS22Q9GZN4 317 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 SVEP1Q4LDE5 3571 aa12.66□□□□□ -0.38
SQSTM1-213ENST00000510187 TRBV6-1A0A0K0K1D8 114 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 HIGD1CA8MV81 97 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 I3L2K1 104 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 SMAD7O15105 426 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 TCRAP04437 139 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 HTR1DP28221 377 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 UBE2E1P51965 193 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 KRTDAPP60985 99 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 FAM162BQ5T6X4 162 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 PRR27Q6MZM9 219 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 FAM103A1Q9BTL3 118 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 GFRA4Q9GZZ7 299 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 Q9H3A6 140 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 CR1P17927 2039 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 C19orf71A6NCJ1 209 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 FAM231BA6NCW3 169 aa12.65□□□□□ -0.38
SQSTM1-213ENST00000510187 A8MWL6 223 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms