RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 RRN3P1Q2M238 152 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 LINC00336Q6ZUF6 198 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 IGF2BP2-AS1Q96M15 143 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 NIPSNAP3BQ9BS92 247 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 SHANK2-AS3Q9BTD1 123 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 GGACTQ9BVM4 153 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 SLC25A39Q9BZJ4 359 aaPredicted RBP10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 NDUFA13Q9P0J0 144 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 CELA1Q9UNI1 258 aa10.35□□□□□ -0.75
HMGCS1-203ENST00000507004 IGHV3OR16-12A0A075B7B8 117 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 H3BRN7 92 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 SSSCA1O60232 199 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 IAH1Q2TAA2 248 aaPredicted RBP10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 TEPPQ6URK8 271 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 TMEM14EPQ6UXP3 125 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 MITD1Q8WV92 249 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 TMEM208Q9BTX3 173 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 DKK2Q9UBU2 259 aa10.34□□□□□ -0.75
HMGCS1-203ENST00000507004 PMS2P5A8MQ11 134 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 LINC00869P0C866 280 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 CXCL2P19875 107 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 FXYD7P58549 80 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 PRR20EP86478 221 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 PRR20CP86479 221 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 PRR20DP86480 221 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 PRR20BP86481 221 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 PRR20AP86496 221 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 ZNF546Q86UE3 836 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 POM121L12Q8N7R1 296 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 SLC35B3Q9H1N7 401 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 KMT2AQ03164 3969 aa10.33□□□□□ -0.76
HMGCS1-203ENST00000507004 A0A087X0K7 114 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 LOC102723971A0A1B0GUV8 181 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 INSP01308 110 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 OR5G3P0C626 314 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 IL7P13232 177 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 GATA2P23769 480 aaPredicted RBP10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 EMP1P54849 157 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 ZNF846Q147U1 533 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 FAM222AQ5U5X8 452 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 ZBTB8BQ8NAP8 495 aaPredicted RBP10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 FLVCR2Q9UPI3 526 aa10.32□□□□□ -0.76
HMGCS1-203ENST00000507004 F6UB75 175 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 GOSR2O14653 212 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 SCGB1D2O95969 90 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 METTL15P1P0C7V9 234 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 ANXA7P20073 488 aaKnown RBP10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 CNN1P51911 297 aaKnown RBP10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 DEFB1P60022 68 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 FGL1Q08830 312 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 RAB31Q13636 194 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 AMTNQ6UX39 209 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 TMEM182Q6ZP80 229 aaPredicted RBP10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 C1orf158Q8N1D5 194 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 TMEM256Q8N2U0 113 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 LRRC20Q8TCA0 184 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 C20orf173Q96LM9 149 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 SCRT1Q9BWW7 348 aa10.31□□□□□ -0.76
HMGCS1-203ENST00000507004 LINC00854A0A1B0GVQ3 168 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 LYRM9A8MSI8 78 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 L7N2F9 121 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 TSPOP30536 169 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 BTCP35070 178 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 VAMP2P63027 116 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 ZNF767PQ75MW2 155 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 ZNF738Q8NE65 137 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 OR11H7Q8NGC8 314 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 SDHCQ99643 169 aaPredicted RBP10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 SLC50A1Q9BRV3 221 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 ARV1Q9H2C2 271 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 PPP1R14DQ9NXH3 145 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 GSKIPQ9P0R6 139 aa10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 YTHDF2Q9Y5A9 579 aaKnown RBP10.3□□□□□ -0.76
HMGCS1-203ENST00000507004 BOLA2-SMG1P6H3BVE0 249 aa10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 PVALBP20472 110 aaPredicted RBP10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 DAD1P61803 113 aa10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 RRAS2P62070 204 aaPredicted RBP10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 RNF212Q495C1 297 aa10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 LCN15Q6UWW0 184 aa10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 C17orf77Q96MU5 243 aa10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 ARL6Q9H0F7 186 aa10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 C20orf85Q9H1P6 137 aa10.29□□□□□ -0.76
HMGCS1-203ENST00000507004 TRAV8-2A0A0B4J237 113 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 LYRM1O43325 122 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 CXCL3P19876 107 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 PSG3Q16557 428 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 LINC00299Q6ZSB3 139 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 BPIFA4PQ86YQ2 179 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 UBE2DNLQ8IWF7 75 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 C15orf53Q8NAA6 179 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 OR8A1Q8NGG7 326 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 C20orf144Q9BQM9 153 aa10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 RCL1Q9Y2P8 373 aaKnown RBP10.28□□□□□ -0.76
HMGCS1-203ENST00000507004 C7orf66A4D0T2 115 aa10.27□□□□□ -0.77
HMGCS1-203ENST00000507004 MBPP02686 304 aaPredicted RBP10.27□□□□□ -0.77
HMGCS1-203ENST00000507004 TCRBP04435 133 aa10.27□□□□□ -0.77
HMGCS1-203ENST00000507004 FAM3BP58499 235 aaPredicted RBP10.27□□□□□ -0.77
HMGCS1-203ENST00000507004 RHOBP62745 196 aa10.27□□□□□ -0.77
HMGCS1-203ENST00000507004 SPINK13Q1W4C9 94 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms