RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 NPFFO15130 113 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 IGHV3-11P01762 117 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 SPRNQ5BIV9 151 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 ZNF114Q8NC26 417 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 FOXC2Q99958 501 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 SH2D1AO60880 128 aa8.66□□□□□ -1.02
LIMCH1-205ENST00000503057 PCNX3Q9H6A9 2034 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 DSCR9P59020 149 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 TMEM14CQ9P0S9 112 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 NPIPB5A8MRT5 1133 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 DDB2Q92466 427 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 FAM74A4Q5TZK3 123 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 LYZL1Q6UWQ5 148 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 MS4A6AQ9H2W1 248 aa8.65□□□□□ -1.02
LIMCH1-205ENST00000503057 C3orf79P0CE67 100 aa8.65□□□□□ -1.03
LIMCH1-205ENST00000503057 SCGB3A1Q96QR1 104 aa8.65□□□□□ -1.03
LIMCH1-205ENST00000503057 TRAV8-1A0A0A6YYK1 113 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 FAM223BA6NKX1 122 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 OR11H12B2RN74 326 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 LY6HO94772 140 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 SMIM13P0DJ93 91 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 LINC01559Q495D7 138 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 FAM223AQ8IWN6 122 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 OR11H1Q8NG94 326 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 OR11H2Q8NH07 326 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 SHISA9B4DS77 424 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 IGHV2-70P01814 119 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 RAB37Q96AX2 223 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 TPSG1Q9NRR2 321 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 YLPM1P49750 1951 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 PAPPA-AS1Q5QFB9 102 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 Q6ZPA2 131 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 PRSS33Q8NF86 280 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 C5orf30Q96GV9 206 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 LGALS3P17931 250 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 DIAPH2-AS1Q14236 149 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 KIR3DL3Q8N743 410 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 NPFFR1Q9GZQ6 430 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 TPRP12270 2363 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 D6R8Y8 96 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 H7C1H1 209 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 SRSF1Q07955 248 aaKnown RBP eCLIP8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 C2orf88Q9BSF0 95 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 MYO7BQ6PIF6 2116 aa8.64□□□□□ -1.03
LIMCH1-205ENST00000503057 UBE2E1P51965 193 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 LCN12Q6JVE5 192 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 FXYD5Q96DB9 178 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 COL5A1P20908 1838 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 TRBV19A0A075B6N1 114 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 NDUFB8O95169 186 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 C9orf139Q6ZV77 190 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 FAM110DQ8TAY7 271 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 KMT2EQ8IZD2 1858 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 A8MWP6 167 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 IGKV3-20P01619 116 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 ZNF138P52744 262 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 CR1LQ2VPA4 569 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 SEM1Q6ZVN7 128 aa8.63□□□□□ -1.03
LIMCH1-205ENST00000503057 GPR179Q6PRD1 2367 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 ICE1Q9Y2F5 2266 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 GNLYP22749 145 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 SAA4P35542 130 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 GUSBP1Q15486 140 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 CTSZQ9UBR2 303 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 LOC102724200A0A096LPH7 203 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 H3BRN7 92 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 TGFAP01135 160 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 TMEM219Q86XT9 240 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 OR4X2Q8NGF9 303 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 K7EM74 188 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 K7EN84 100 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 SNAI2O43623 268 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 NUTF2P61970 127 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 IFI27L1Q96BM0 104 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 PYGO2Q9BRQ0 406 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 PRSS22Q9GZN4 317 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 POLR3KQ9Y2Y1 108 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 NCOA6Q14686 2063 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 TRAV8-6A0A0B4J262 113 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 C18orf32Q8TCD1 76 aa8.62□□□□□ -1.03
LIMCH1-205ENST00000503057 ORMDL2Q53FV1 153 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 USMG5Q96IX5 58 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 BPESC1Q9GZL8 116 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 EP300Q09472 2414 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 DOCK7Q96N67 2140 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 SYS1-DBNDD2H3BUS1 97 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 DPM2O94777 84 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 PPIFP30405 207 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 A0A1B0GUS0 222 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 TTC9CQ8N5M4 171 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 C20orf144Q9BQM9 153 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 PEMTQ9UBM1 199 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 SPTA1P02549 2419 aa8.61□□□□□ -1.03
LIMCH1-205ENST00000503057 IGLC7A0M8Q6 106 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 DUSP14O95147 198 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 P0C879 139 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 Q8TAT8 98 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 SMPXQ9UHP9 88 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 IGHV2-70DA0A0C4DH43 119 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms