RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 NPPCP23582 126 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 NKX2-1P43699 371 aaPredicted RBP11.62□□□□□ -0.55
VIM-208ENST00000497849 P2RY1P47900 373 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 KRTAP10-2P60368 255 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 S100A10P60903 97 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 RAB32Q13637 225 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 PSMG4Q5JS54 123 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 ZNRF2Q8NHG8 242 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 THAP6Q8TBB0 222 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 DTD1Q8TEA8 209 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 TMEM170AQ8WVE7 144 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 HYLS1Q96M11 299 aa11.62□□□□□ -0.55
VIM-208ENST00000497849 FLG2Q5D862 2391 aaPredicted RBP11.61□□□□□ -0.55
VIM-208ENST00000497849 INS-IGF2F8WCM5 200 aa11.61□□□□□ -0.55
VIM-208ENST00000497849 SYNGR2O43760 224 aa11.61□□□□□ -0.55
VIM-208ENST00000497849 MBPP02686 304 aaPredicted RBP11.61□□□□□ -0.55
VIM-208ENST00000497849 RLN2P04090 185 aa11.61□□□□□ -0.55
VIM-208ENST00000497849 CRYBB3P26998 211 aa11.61□□□□□ -0.55
VIM-208ENST00000497849 SNCAP37840 140 aa11.61□□□□□ -0.55
VIM-208ENST00000497849 NUTF2P61970 127 aaKnown RBP11.61□□□□□ -0.55
VIM-208ENST00000497849 MLANAQ16655 118 aa11.61□□□□□ -0.55
VIM-208ENST00000497849 RCL1Q9Y2P8 373 aaKnown RBP11.61□□□□□ -0.55
VIM-208ENST00000497849 LSM5Q9Y4Y9 91 aaKnown RBP11.61□□□□□ -0.55
VIM-208ENST00000497849 FXYD6-FXYD2A0A087WZ82 144 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 SMIM9A6NGZ8 99 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 FAM90A26D6RGX4 464 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 H3BMM0 161 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 SSSCA1O60232 199 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 TMEM50AO95807 157 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 SLC25A4P12235 298 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 NPBWR1P48145 328 aa11.6□□□□□ -0.55
VIM-208ENST00000497849 NKX2-5P52952 324 aaPredicted RBP11.6□□□□□ -0.55
VIM-208ENST00000497849 SRRM2Q9UQ35 2752 aaKnown RBP11.6□□□□□ -0.55
VIM-208ENST00000497849 HELTA6NFD8 242 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 K7EPK0 472 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 MED6O75586 246 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 PAX9P55771 341 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 BSXQ3C1V8 233 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 PRSS54Q6PEW0 395 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 SLC24A4Q8NFF2 622 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 OR11H4Q8NGC9 324 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 METTL26Q96S19 204 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 MBD2Q9UBB5 411 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 CACFD1Q9UGQ2 172 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 PAIP2BQ9ULR5 123 aaKnown RBP11.59□□□□□ -0.55
VIM-208ENST00000497849 RFNGQ9Y644 331 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 VPS13BQ7Z7G8 4022 aa11.59□□□□□ -0.55
VIM-208ENST00000497849 TEX48A0A1B0GUV7 120 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 HMSDA8MTL9 139 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 H0YIZ8 118 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 H3BP45 60 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 HTR2BP41595 481 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 ATG101Q9BSB4 218 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 PSENENQ9NZ42 101 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 OR5AC2Q9NZP5 309 aa11.58□□□□□ -0.56
VIM-208ENST00000497849 IGHV3OR16-12A0A075B7B8 117 aa11.57□□□□□ -0.56
VIM-208ENST00000497849 PVALBP20472 110 aaPredicted RBP11.57□□□□□ -0.56
VIM-208ENST00000497849 SUB1P53999 127 aaKnown RBP eCLIP11.57□□□□□ -0.56
VIM-208ENST00000497849 C2orf83Q53S99 150 aa11.57□□□□□ -0.56
VIM-208ENST00000497849 SPANXN5Q5MJ07 72 aa11.57□□□□□ -0.56
VIM-208ENST00000497849 ZNF546Q86UE3 836 aa11.57□□□□□ -0.56
VIM-208ENST00000497849 C15orf53Q8NAA6 179 aa11.57□□□□□ -0.56
VIM-208ENST00000497849 FNDC4Q9H6D8 234 aaPredicted RBP11.57□□□□□ -0.56
VIM-208ENST00000497849 MRPL36Q9P0J6 103 aaKnown RBP11.57□□□□□ -0.56
VIM-208ENST00000497849 U3KQE9 123 aa11.57□□□□□ -0.56
VIM-208ENST00000497849 E5RGE8 158 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 L7N2F9 121 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 ARPC5O15511 151 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 NUP62P37198 522 aaPredicted RBP11.56□□□□□ -0.56
VIM-208ENST00000497849 FXYD7P58549 80 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 VAMP2P63027 116 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 INO80EQ8NBZ0 244 aaPredicted RBP11.56□□□□□ -0.56
VIM-208ENST00000497849 SMIM8Q96KF7 97 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 C11orf1Q9H5F2 150 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 TNFSF18Q9UNG2 199 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 U3KQ87 197 aa11.56□□□□□ -0.56
VIM-208ENST00000497849 HLA-DRB4P13762 266 aa11.55□□□□□ -0.56
VIM-208ENST00000497849 GDF5OSQ5U4N7 250 aa11.55□□□□□ -0.56
VIM-208ENST00000497849 C9orf62Q8N4C0 152 aa11.55□□□□□ -0.56
VIM-208ENST00000497849 GLMPQ8WWB7 406 aa11.55□□□□□ -0.56
VIM-208ENST00000497849 CIB3Q96Q77 187 aaPredicted RBP11.55□□□□□ -0.56
VIM-208ENST00000497849 YTHDF2Q9Y5A9 579 aaKnown RBP11.55□□□□□ -0.56
VIM-208ENST00000497849 HLA-DRB4X5D2U9 266 aa11.55□□□□□ -0.56
VIM-208ENST00000497849 FAM24AA6NFZ4 105 aa11.54□□□□□ -0.56
VIM-208ENST00000497849 C16orf54Q6UWD8 224 aa11.54□□□□□ -0.56
VIM-208ENST00000497849 ACOT7LQ6ZUV0 252 aa11.54□□□□□ -0.56
VIM-208ENST00000497849 LYPD1Q8N2G4 141 aa11.54□□□□□ -0.56
VIM-208ENST00000497849 STRAPQ9Y3F4 350 aaKnown RBP11.54□□□□□ -0.56
VIM-208ENST00000497849 HSPB11Q9Y547 144 aa11.54□□□□□ -0.56
VIM-208ENST00000497849 CLN5O75503 358 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 METTL15P1P0C7V9 234 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 OPRK1P41145 380 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 DEFB1P60022 68 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 DAD1P61803 113 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 SNRPD3P62318 126 aaKnown RBP11.53□□□□□ -0.56
VIM-208ENST00000497849 OR2F1Q13607 317 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 LGALSLQ3ZCW2 172 aaPredicted RBP11.53□□□□□ -0.56
VIM-208ENST00000497849 Q5VSD8 79 aa11.53□□□□□ -0.56
VIM-208ENST00000497849 NARS2Q96I59 477 aaKnown RBP11.53□□□□□ -0.56
VIM-208ENST00000497849 KRTAP1-5Q9BYS1 174 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms