RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 NTF4P34130 210 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 GBF1Q92538 1859 aa4.81□□□□□ -1.64
USF3-204ENST00000496826 A0A1W2PRX2 142 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 IGKV1D-33P01593 117 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 IGKV1-33P01594 117 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 CRYGSP22914 178 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 GNG5P63218 68 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 FHL1Q13642 323 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 ZNF79Q15937 498 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 CRYGNQ8WXF5 182 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 FIZ1Q96SL8 496 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 CSTL1Q9H114 145 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 KIAA0556O60303 1618 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 NAV1Q8NEY1 1877 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 ANGP03950 147 aaKnown RBP4.8□□□□□ -1.64
USF3-204ENST00000496826 LINC00311Q8N616 119 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 DIRC1Q969H9 104 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 THADAQ6YHU6 1953 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 RIMBP3CA6NJZ7 1639 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 RIMBP3BA6NNM3 1639 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 RIMBP3Q9UFD9 1639 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 SPATA12Q7Z6I5 190 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 LYPD6BQ8NI32 183 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 PKDREJQ9NTG1 2253 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 FAM231BA6NCW3 169 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 SIVA1O15304 175 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 DANCRP0C864 163 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 C8orf49Q96NF6 230 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 CAMK2N2Q96S95 79 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 A0A087X0K7 114 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 C8orf86Q6ZUL3 223 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 CDAP32320 146 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 TEX37Q96LM6 180 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 TRAV1-1A0A0B4J248 108 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 HIST1H2BKO60814 126 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 HIST1H2BJP06899 126 aa4.8□□□□□ -1.64
USF3-204ENST00000496826 ZC3H3Q8IXZ2 948 aaKnown RBP4.8□□□□□ -1.64
USF3-204ENST00000496826 PRSS46E5RG02 174 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 APELAP0DMC3 54 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 FOXA3P55318 350 aaPredicted RBP4.79□□□□□ -1.64
USF3-204ENST00000496826 TGIF1Q15583 401 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 C1orf195Q5TG92 126 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 PSG8Q9UQ74 426 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 CACNA1SQ13698 1873 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 PLA2G1BP04054 148 aaKnown RBP4.79□□□□□ -1.64
USF3-204ENST00000496826 HMGA1P17096 107 aaKnown RBP4.79□□□□□ -1.64
USF3-204ENST00000496826 LINC00527Q9UJ94 153 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 A0A0U1RRA0 63 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 LINC01356Q8N9X3 169 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 IGHV3-21A0A0B4J1V1 117 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 M0R1W7 72 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 DAZ2Q13117 558 aaKnown RBP4.79□□□□□ -1.64
USF3-204ENST00000496826 KIR3DS1Q14943 382 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 C9orf66Q5T8R8 295 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 C12orf76Q8N812 135 aaPredicted RBP4.79□□□□□ -1.64
USF3-204ENST00000496826 DAZ3Q9NR90 486 aaKnown RBP4.79□□□□□ -1.64
USF3-204ENST00000496826 C5orf63A6NC05 138 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 CCL8P80075 99 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 SRSF7Q16629 238 aaKnown RBP eCLIP4.79□□□□□ -1.64
USF3-204ENST00000496826 C3orf36Q3SXR2 165 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 CD177Q8N6Q3 437 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 NRACQ8N912 160 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 C8orf44Q96CB5 159 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 TRBV19A0A075B6N1 114 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 IGHV2-26A0A0B4J1V2 119 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 TDRG1Q3Y452 100 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 PPP1R3EQ9H7J1 279 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 TNCP24821 2201 aa4.79□□□□□ -1.64
USF3-204ENST00000496826 G3V2L1 256 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 TM2D1Q9BX74 207 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 MCM3APO60318 1980 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 IFI6P09912 130 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 DEFB105AQ8NG35 78 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 ST6GALNAC6Q969X2 333 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 FER1L5A0AVI2 2057 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 RNF225M0QZC1 329 aaPredicted RBP4.78□□□□□ -1.64
USF3-204ENST00000496826 IMMP1LQ96LU5 166 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 ARMS2P0C7Q2 107 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 C9orf85Q96MD7 179 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 DOCK3Q8IZD9 2030 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 MED12LQ86YW9 2145 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 SHISA3A0PJX4 238 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 FNDC10F2Z333 226 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 SPART-AS1P0CW21 52 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 KLHL30-AS1Q8NEE0 82 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 IGF1P05019 195 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 ITLN1Q8WWA0 313 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 PFN2P35080 140 aa4.78□□□□□ -1.64
USF3-204ENST00000496826 SCN11AQ9UI33 1791 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 F8VVB4 439 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 F8VWA3 439 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 IGF2P01344 180 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 GUSBP1Q15486 140 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 PEAR1Q5VY43 1037 aaPredicted RBP4.77□□□□□ -1.65
USF3-204ENST00000496826 TRGV9Q99603 122 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 DIP2AQ14689 1571 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 C15orf32Q32M92 178 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 LGALS9BQ3B8N2 356 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 LGALS9CQ6DKI2 356 aa4.77□□□□□ -1.65
USF3-204ENST00000496826 LRRK1Q38SD2 2015 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms