RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 DYNC2LI1Q8TCX1 351 aa12.23□□□□□ -0.45
COL9A1-210ENST00000493682 ATG101Q9BSB4 218 aa12.23□□□□□ -0.45
COL9A1-210ENST00000493682 CCDC59Q9P031 241 aaKnown RBP12.23□□□□□ -0.45
COL9A1-210ENST00000493682 TRAV8-2A0A0B4J237 113 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 LYRM9A8MSI8 78 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 MED6O75586 246 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 DUSP14O95147 198 aaKnown RBP12.22□□□□□ -0.45
COL9A1-210ENST00000493682 INSP01308 110 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 DEFB130BP0DP73 79 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 DEFB130AP0DP74 79 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 SLC25A6P12236 298 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 GATA2P23769 480 aaPredicted RBP12.22□□□□□ -0.45
COL9A1-210ENST00000493682 TNP2Q05952 138 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 TMED4Q7Z7H5 227 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 BPIFCQ8NFQ6 507 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 SOSTQ9BQB4 213 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 MRPS26Q9BYN8 205 aaKnown RBP12.22□□□□□ -0.45
COL9A1-210ENST00000493682 PGPEP1Q9NXJ5 209 aa12.22□□□□□ -0.45
COL9A1-210ENST00000493682 SMCPP49901 116 aaPredicted RBP12.21□□□□□ -0.45
COL9A1-210ENST00000493682 RPP30P78346 268 aaKnown RBP12.21□□□□□ -0.45
COL9A1-210ENST00000493682 TMEM128Q5BJH2 165 aa12.21□□□□□ -0.45
COL9A1-210ENST00000493682 RNF182Q8N6D2 247 aa12.21□□□□□ -0.45
COL9A1-210ENST00000493682 LRTM2Q8N967 370 aa12.21□□□□□ -0.45
COL9A1-210ENST00000493682 GPR82Q96P67 336 aa12.21□□□□□ -0.45
COL9A1-210ENST00000493682 CIB3Q96Q77 187 aaPredicted RBP12.21□□□□□ -0.45
COL9A1-210ENST00000493682 TMEM147Q9BVK8 224 aa12.21□□□□□ -0.45
COL9A1-210ENST00000493682 WRBO00258 174 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 SYNGR2O43760 224 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 AZU1P20160 251 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 VAMP1P23763 118 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 TSPOP30536 169 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 B2MP61769 119 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 BAP18Q8IXM2 172 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 ZNRF2Q8NHG8 242 aa12.2□□□□□ -0.46
COL9A1-210ENST00000493682 NBDYA0A0U1RRE5 68 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 PLAC8L1A1L4L8 177 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 FABP12A6NFH5 140 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 C16orf90A8MZG2 172 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 F5H768 121 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 S100A7P31151 101 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 TNFSF8P32971 234 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 AKR1C1Q04828 323 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 FGL1Q08830 312 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 FCN2Q15485 313 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 RAB2BQ8WUD1 216 aa12.19□□□□□ -0.46
COL9A1-210ENST00000493682 SLC25A39Q9BZJ4 359 aaPredicted RBP12.19□□□□□ -0.46
COL9A1-210ENST00000493682 TRAV12-2A0A075B6T6 113 aa12.18□□□□□ -0.46
COL9A1-210ENST00000493682 NUDT3O95989 172 aa12.18□□□□□ -0.46
COL9A1-210ENST00000493682 FAUP35544 74 aaKnown RBP12.18□□□□□ -0.46
COL9A1-210ENST00000493682 SPANXN5Q5MJ07 72 aa12.18□□□□□ -0.46
COL9A1-210ENST00000493682 ACOT7LQ6ZUV0 252 aa12.18□□□□□ -0.46
COL9A1-210ENST00000493682 C6orf223Q8N319 242 aa12.18□□□□□ -0.46
COL9A1-210ENST00000493682 ZNF738Q8NE65 137 aa12.18□□□□□ -0.46
COL9A1-210ENST00000493682 SLIRPQ9GZT3 109 aaKnown RBP12.18□□□□□ -0.46
COL9A1-210ENST00000493682 H3BP45 60 aa12.17□□□□□ -0.46
COL9A1-210ENST00000493682 H3BRN7 92 aa12.17□□□□□ -0.46
COL9A1-210ENST00000493682 BOLA2-SMG1P6H3BVE0 249 aa12.17□□□□□ -0.46
COL9A1-210ENST00000493682 TMBIM6P55061 237 aa12.17□□□□□ -0.46
COL9A1-210ENST00000493682 TRIM63Q969Q1 353 aa12.17□□□□□ -0.46
COL9A1-210ENST00000493682 SHANK2-AS3Q9BTD1 123 aa12.17□□□□□ -0.46
COL9A1-210ENST00000493682 HSPG2P98160 4391 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 CBY3A6NI87 242 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 CDK2AP2O75956 126 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 SFT2D2O95562 160 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 ATP5G1P05496 136 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 HOXB5P09067 269 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 ATP5G3P48201 142 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 PPP1R1AQ13522 171 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 CYP2G1PQ6ZSU1 146 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 TMEM144Q7Z5S9 345 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 LINC01587Q99440 93 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 BCL7BQ9BQE9 202 aa12.16□□□□□ -0.46
COL9A1-210ENST00000493682 STRAPQ9Y3F4 350 aaKnown RBP12.16□□□□□ -0.46
COL9A1-210ENST00000493682 IL5P05113 134 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 RPL7P18124 248 aaKnown RBP12.15□□□□□ -0.46
COL9A1-210ENST00000493682 CCL18P55774 89 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 AP3S2P59780 193 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 RHOBP62745 196 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 HIST1H1AQ02539 215 aaPredicted RBP12.15□□□□□ -0.46
COL9A1-210ENST00000493682 TMEM256Q8N2U0 113 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 OR8A1Q8NGG7 326 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 SLC25A21Q9BQT8 299 aaPredicted RBP12.15□□□□□ -0.46
COL9A1-210ENST00000493682 HIGD1AQ9Y241 93 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 LINC00588Q9Y4M8 146 aa12.15□□□□□ -0.46
COL9A1-210ENST00000493682 HYPMO75409 117 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 HTN1P15515 57 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 CXCL3P19876 107 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 TAS2R60P59551 318 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 RAP2BP61225 183 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 TOMM5Q8N4H5 51 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 MCFD2Q8NI22 146 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 RNF141Q8WVD5 230 aa12.14□□□□□ -0.47
COL9A1-210ENST00000493682 SMCO3A2RU48 225 aa12.13□□□□□ -0.47
COL9A1-210ENST00000493682 PRB4P10163 310 aaPredicted RBP12.13□□□□□ -0.47
COL9A1-210ENST00000493682 PLP1P60201 277 aa12.13□□□□□ -0.47
COL9A1-210ENST00000493682 PSG3Q16557 428 aa12.13□□□□□ -0.47
COL9A1-210ENST00000493682 PYDC2Q56P42 97 aa12.13□□□□□ -0.47
COL9A1-210ENST00000493682 C16orf74Q96GX8 76 aa12.13□□□□□ -0.47
COL9A1-210ENST00000493682 UHRF2Q96PU4 802 aa12.13□□□□□ -0.47
COL9A1-210ENST00000493682 PPP1R14DQ9NXH3 145 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms