RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TRMT12Q53H54 448 aaKnown RBP0.71□□□□□ -2.3
SMC4-220ENST00000488017 TMEM97Q5BJF2 176 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 CST9Q5W186 159 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 GLIPR1L1Q6UWM5 242 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 ALKAL2Q6UX46 152 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 TOMM20LQ6UXN7 152 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 FOXI2Q6ZQN5 318 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 ZNF720Q7Z2F6 126 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 NIT1Q86X76 327 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 CTAGE3PQ8IX95 158 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 C1orf158Q8N1D5 194 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 EXOC3-AS1Q8N2X6 119 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 MUC15Q8N387 334 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 C5orf17Q8NAS9 161 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 LINC00301Q8NCQ3 95 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 OR4E2Q8NGC2 313 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 OR9I1Q8NGQ6 314 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 ZNRF2Q8NHG8 242 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 ZNF418Q8TF45 676 aaPredicted RBP0.71□□□□□ -2.3
SMC4-220ENST00000488017 Q8WTZ3 238 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 TNFAIP8L1Q8WVP5 186 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 C10orf82Q8WW14 230 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 ROPN1LQ96C74 230 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 DCUN1D1Q96GG9 259 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 ZC2HC1AQ96GY0 325 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 YPEL2Q96QA6 119 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 TP53RKQ96S44 253 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 SDF2Q99470 211 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BLQ99880 126 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 MRPL57Q9BQC6 102 aaKnown RBP0.71□□□□□ -2.3
SMC4-220ENST00000488017 PDCD10Q9BUL8 212 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 EFCAB11Q9BUY7 163 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 PECRQ9BY49 303 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 TTTY12Q9BZ98 90 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 OR2J1Q9GZK6 312 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 C20orf27Q9GZN8 174 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 RNASE7Q9H1E1 156 aaKnown RBP0.71□□□□□ -2.3
SMC4-220ENST00000488017 GTSF1LQ9H1H1 148 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 MS4A6AQ9H2W1 248 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 OR51I2Q9H344 312 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 C16orf95Q9H693 158 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 EFCAB1Q9HAE3 211 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 POPDC3Q9HBV1 291 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 UBQLN4Q9NRR5 601 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 MED29Q9NX70 200 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 SCN3BQ9NY72 215 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 CALML5Q9NZT1 146 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 HSPB8Q9UJY1 196 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 GNG8Q9UK08 70 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 BOKQ9UMX3 212 aaPredicted RBP0.71□□□□□ -2.3
SMC4-220ENST00000488017 LAMTOR2Q9Y2Q5 125 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 HSPB11Q9Y547 144 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 SNX10Q9Y5X0 201 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 A0A0G2JMZ2 1700 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 LRRC37A2A6NM11 1700 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 LRRC37AA6NMS7 1700 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 PXDNLA1KZ92 1463 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 A2ML1A8K2U0 1454 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 RGS12O14924 1447 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 PTPRKQ15262 1439 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 ARHGAP32A7KAX9 2087 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 MYOFQ9NZM1 2061 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 PAPPAQ13219 1627 aa0.71□□□□□ -2.3
SMC4-220ENST00000488017 CICQ96RK0 1608 aaPredicted RBP0.71□□□□□ -2.3
SMC4-220ENST00000488017 BAZ2BQ9UIF8 2168 aaKnown RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 SLIT1O75093 1534 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 CPS1P31327 1500 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 ZNF831Q5JPB2 1677 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TRAV36DV7A0A075B6V5 113 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TRAV38-1A0A0B4J264 116 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 FAM236DA0A1B0GTK5 79 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 ODAMA1E959 279 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TMEM218A2RU14 115 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 MAP1LC3B2A6NCE7 125 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 ODF3BA8MYP8 253 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 EFCAB9A8MZ26 197 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 K7ERU9 68 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 TAX1BP3O14907 124 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 DEGS1O15121 323 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SSNA1O43805 119 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BKO60814 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SIX6O95475 246 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 LTAP01374 205 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HBZP02008 142 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 APOC3P02656 99 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BJP06899 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 CD14P08571 375 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 IGLC1P0CG04 106 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SMIM17P0DL12 118 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SULT1A3P0DMM9 295 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 SULT1A4P0DMN0 295 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 LINC00694P0DN24 101 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 FAM236CP0DP71 79 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HLA-EP13747 358 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 CXCL2P19875 107 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H1TP22492 207 aaPredicted RBP0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BOP23527 126 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 CDK2P24941 298 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 S100GP29377 79 aa0.7□□□□□ -2.3
SMC4-220ENST00000488017 HIST1H2BBP33778 126 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms