RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 MAP1LC3AQ9H492 121 aa5.03□□□□□ -1.6
VPS13D-209ENST00000487188 DKK2Q9UBU2 259 aa5.03□□□□□ -1.6
VPS13D-209ENST00000487188 SS18L2Q9UHA2 77 aa5.03□□□□□ -1.6
VPS13D-209ENST00000487188 TTC28Q96AY4 2481 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 LOC107984156A0A0G2JMH3 177 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 K7EMI3 77 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 LAMTOR5O43504 91 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 LOXL1Q08397 574 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-209ENST00000487188 TWIST1Q15672 202 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 HCP5Q6MZN7 132 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 CFAP161Q6P656 301 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ARL17AQ8IVW1 177 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 AMN1Q8IY45 258 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 OR10X1Q8NGY0 326 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ASCL2Q99929 193 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 TTTY13Q9BZ97 58 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 TTTY12Q9BZ98 90 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 OTORQ9NRC9 128 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ABCA1O95477 2261 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 C19orf71A6NCJ1 209 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 PRR33A8MZF0 331 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 IGKCP01834 107 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 FAM106CPP0CH98 169 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 APELAP0DMC3 54 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 PPIFP30405 207 aaKnown RBP5.02□□□□□ -1.61
VPS13D-209ENST00000487188 FAM106AQ4KMX7 169 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 C10orf55Q5SWW7 151 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 PATE2Q6UY27 113 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 DDB2Q92466 427 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ABHD17AQ96GS6 310 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 PRSS22Q9GZN4 317 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 C7orf69Q9H7B7 122 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM160Q9NX00 188 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ICE1Q9Y2F5 2266 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ZDBF2Q9HCK1 2354 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 CUL9Q8IWT3 2517 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 IGLL5B9A064 214 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 IGKV1-16P04430 117 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 PEAR1Q5VY43 1037 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-209ENST00000487188 FOXI2Q6ZQN5 318 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 CEND1Q8N111 149 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 EXOC3-AS1Q8N2X6 119 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ZNF502Q8TBZ5 544 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 ZNF418Q8TF45 676 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-209ENST00000487188 DNAH14Q0VDD8 3507 aa5.02□□□□□ -1.61
VPS13D-209ENST00000487188 NCBP2LA6PVI3 153 aaKnown RBP5.01□□□□□ -1.61
VPS13D-209ENST00000487188 SMKR1H3BMG3 65 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 SPRY3O43610 288 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 RBP4P02753 201 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 IL4P05112 153 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 VMA21Q3ZAQ7 101 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 C8orf86Q6ZUL3 223 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 TANC2Q9HCD6 1990 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 SPTBN2O15020 2390 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 C10orf142B7Z368 130 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 DPM2O94777 84 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 LEPP41159 167 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 LOXL3P58215 753 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 PLGLAQ15195 96 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 ZC2HC1BQ5TFG8 222 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 LYRM7Q5U5X0 104 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 C11orf53Q8IXP5 236 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 RPEQ96AT9 228 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 KLF12Q9Y4X4 402 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 PCNX2A6NKB5 2137 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 IGKV1D-17A0A075B6S4 117 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM213A2RRL7 107 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 H3BVH4 76 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 NDUFS7O75251 213 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 WISP2O76076 250 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 MEOX1P50221 254 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 KLF17Q5JT82 389 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-209ENST00000487188 SFTA2Q6UW10 78 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 OSR1Q8TAX0 266 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-209ENST00000487188 C20orf78Q9BR46 151 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 MLST8Q9BVC4 326 aa5.01□□□□□ -1.61
VPS13D-209ENST00000487188 MRPL20Q9BYC9 149 aaKnown RBP5.01□□□□□ -1.61
VPS13D-209ENST00000487188 INTS1Q8N201 2190 aaKnown RBP5.01□□□□□ -1.61
VPS13D-209ENST00000487188 POU2AF1Q16633 256 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 LYZL1Q6UWQ5 148 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 LCNL1Q6ZST4 164 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 TMEM178AQ8NBL3 297 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 HIGD1BQ9P298 99 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 PSG8Q9UQ74 426 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 TECTAO75443 2155 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 TRBV25-1A0A075B6N4 114 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 PSMB2P49721 201 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 Q0VFX4 171 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 C12orf74Q32Q52 190 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 FAM201AQ5SY85 155 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 FAM90A1Q86YD7 464 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 AAMDCQ9H7C9 122 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 SRRM4A7MD48 611 aaKnown RBP5□□□□□ -1.61
VPS13D-209ENST00000487188 KLRC4-KLRK1H3BQV0 150 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 ARL3P36405 182 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 FAM104BQ5XKR9 115 aa5□□□□□ -1.61
VPS13D-209ENST00000487188 TRGV5A0A0B4J1U4 118 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 SRRM5B3KS81 715 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 E9PLD3 99 aa4.99□□□□□ -1.61
VPS13D-209ENST00000487188 K7ESF4 209 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms