RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 IGHV3-73A0A0B4J1V6 119 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 VGLL1Q99990 258 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 MBD3L4A6NDZ8 208 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-210ENST00000487017 MBD3L3A6NE82 208 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-210ENST00000487017 MBD3L5A6NJ08 208 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-210ENST00000487017 CKS1BP61024 79 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 KLRD1Q13241 179 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 MINOS1Q5TGZ0 78 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 MBD3L2Q8NHZ7 208 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-210ENST00000487017 SIGLEC9Q9Y336 463 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 MINOS1-NBL1R4GNA1 71 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 PTPRDP23468 1912 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 BUB1B-PAK6H3BSN5 160 aa13.4□□□□□ -0.26
COL7A1-210ENST00000487017 PLNP26678 52 aa13.4□□□□□ -0.27
COL7A1-210ENST00000487017 TCF20Q9UGU0 1960 aaKnown RBP13.4□□□□□ -0.27
COL7A1-210ENST00000487017 LINC00158P58513 81 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 FNDC1Q4ZHG4 1894 aaPredicted RBP13.39□□□□□ -0.27
COL7A1-210ENST00000487017 TRAV40A0A0B4J280 105 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 GAGE13Q4V321 117 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 MED12Q93074 2177 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 ADARB2-AS1A8MUL3 147 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 IGHG3P01860 377 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 ZNF138P52744 262 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 C5orf64Q2M2E5 130 aa13.39□□□□□ -0.27
COL7A1-210ENST00000487017 ITGB1BP1O14713 200 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 SPACA3Q8IXA5 215 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 BCL6BQ8N143 479 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-210ENST00000487017 TRIOBPQ9H2D6 2365 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 TSC2P49815 1807 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 KLF17Q5JT82 389 aaPredicted RBP13.38□□□□□ -0.27
COL7A1-210ENST00000487017 ZDBF2Q9HCK1 2354 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 TRAV8-1A0A0A6YYK1 113 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 A8MWV9 139 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 THADAQ6YHU6 1953 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 MLANAQ16655 118 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 MPV17L2Q567V2 206 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 TRAV8-4A0A0B4J246 113 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 FXYD7P58549 80 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 Q0VG73 95 aa13.38□□□□□ -0.27
COL7A1-210ENST00000487017 CACNA1EQ15878 2313 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 A0A087X0K7 114 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 IGKV1-16P04430 117 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 PFN1P07737 140 aaKnown RBP13.37□□□□□ -0.27
COL7A1-210ENST00000487017 Q86TA4 180 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 GFRA4Q9GZZ7 299 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 PAX9P55771 341 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 S100A7L2Q5SY68 101 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 C10orf91Q5T1B1 145 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 Q8TAT8 98 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 LY6DQ14210 128 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 SRSF6Q13247 344 aaKnown RBP13.37□□□□□ -0.27
COL7A1-210ENST00000487017 C9orf139Q6ZV77 190 aa13.37□□□□□ -0.27
COL7A1-210ENST00000487017 A0A0G2JNJ9 132 aa13.36□□□□□ -0.27
COL7A1-210ENST00000487017 M0R1W7 72 aa13.36□□□□□ -0.27
COL7A1-210ENST00000487017 NAA38Q9BRA0 125 aaKnown RBP13.36□□□□□ -0.27
COL7A1-210ENST00000487017 Q9UFV3 132 aa13.36□□□□□ -0.27
COL7A1-210ENST00000487017 ZNF688P0C7X2 276 aa13.36□□□□□ -0.27
COL7A1-210ENST00000487017 CST9LQ9H4G1 147 aa13.36□□□□□ -0.27
COL7A1-210ENST00000487017 TMEM219Q86XT9 240 aa13.36□□□□□ -0.27
COL7A1-210ENST00000487017 GGTLC3B5MD39 225 aa13.36□□□□□ -0.27
COL7A1-210ENST00000487017 TRBV7-1A0A0A6YYK4 115 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 WISP1O95388 367 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 LRRK1Q38SD2 2015 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 COL4A6Q14031 1691 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 TMEM8BA6NDV4 472 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 LMO1P25800 156 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 EFNA4P52798 201 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 LINC00479Q96M42 142 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 ERG28Q9UKR5 140 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 A8MWP6 167 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 LYPD2Q6UXB3 125 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 GATD1Q8NB37 220 aa13.35□□□□□ -0.27
COL7A1-210ENST00000487017 POLR3KQ9Y2Y1 108 aaPredicted RBP13.35□□□□□ -0.27
COL7A1-210ENST00000487017 GHRHP01286 108 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 LURAP1LQ8IV03 231 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 LIME1Q9H400 295 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 TMEM238C9JI98 176 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 WDR81Q562E7 1941 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 SAP30O75446 220 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 UBE2V1Q13404 147 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 ZNF474Q6S9Z5 364 aaPredicted RBP13.34□□□□□ -0.27
COL7A1-210ENST00000487017 TMEM86BQ8N661 226 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 LINC00477Q96M19 166 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 UBE2DNLQ8IWF7 75 aa13.34□□□□□ -0.27
COL7A1-210ENST00000487017 SRSF8Q9BRL6 282 aaKnown RBP13.34□□□□□ -0.27
COL7A1-210ENST00000487017 PLXNA4Q9HCM2 1894 aa13.33□□□□□ -0.27
COL7A1-210ENST00000487017 SHANK2-AS3Q9BTD1 123 aa13.33□□□□□ -0.27
COL7A1-210ENST00000487017 TMEM14BQ9NUH8 114 aa13.33□□□□□ -0.27
COL7A1-210ENST00000487017 M0R2P5 195 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 EREGO14944 169 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 IGHV3-53P01767 116 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 ZNF726P1Q15940 193 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 AMN1Q8IY45 258 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 TMEM158Q8WZ71 300 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 ZNF524Q96C55 264 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 JPT2Q9H910 190 aa13.33□□□□□ -0.28
COL7A1-210ENST00000487017 PHF3Q92576 2039 aaKnown RBP13.33□□□□□ -0.28
COL7A1-210ENST00000487017 A0A1W2PPI3 338 aa13.32□□□□□ -0.28
COL7A1-210ENST00000487017 NDPQ00604 133 aa13.32□□□□□ -0.28
COL7A1-210ENST00000487017 IGFL4Q6B9Z1 124 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms