RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 PRELID3BQ9Y3B1 194 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 SCN8AQ9UQD0 1980 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 PIK3C2GO75747 1445 aa0.04□□□□□ -2.4
VPS50-217ENST00000485140 PHRF1Q9P1Y6 1649 aaKnown RBP0.03□□□□□ -2.4
VPS50-217ENST00000485140 TRAV23DV6A0A075B6W5 121 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 NUPR2A6NF83 97 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 FAM159BA6NKW6 160 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 C5orf67F2Z3F1 127 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 M0R233 179 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 PPYP01298 95 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 SRIP30626 198 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 MYL6P60660 151 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 SPA17Q15506 151 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 EIF5AL1Q6IS14 154 aaKnown RBP0.03□□□□□ -2.4
VPS50-217ENST00000485140 OR5AS1Q8N127 324 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 FAM103A1Q9BTL3 118 aaKnown RBP0.03□□□□□ -2.4
VPS50-217ENST00000485140 KIFC1Q9BW19 673 aa0.03□□□□□ -2.4
VPS50-217ENST00000485140 RNASE7Q9H1E1 156 aaKnown RBP0.03□□□□□ -2.4
VPS50-217ENST00000485140 PLXNA4Q9HCM2 1894 aa0.03□□□□□ -2.41
VPS50-217ENST00000485140 TRBV19A0A075B6N1 114 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 A0A087WSZ3 146 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 OR7C1O76099 320 aaPredicted RBP0.02□□□□□ -2.41
VPS50-217ENST00000485140 RPS17P08708 135 aaKnown RBP0.02□□□□□ -2.41
VPS50-217ENST00000485140 CCL4P13236 92 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 DEFA3P59666 94 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 VBP1P61758 197 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 UBE2BP63146 152 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 QRFPP83859 136 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 STAG3L4Q8TBR4 150 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 RAB37Q96AX2 223 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 TEX37Q96LM6 180 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 SPRR2GQ9BYE4 73 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 PARVBQ9HBI1 364 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 OPTCQ9UBM4 332 aa0.02□□□□□ -2.41
VPS50-217ENST00000485140 KIF1BO60333 1816 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 PTPRFP10586 1907 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 TET1Q8NFU7 2136 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 TRAV4A0A0B4J268 109 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 ZNF727A8MUV8 499 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 CST8O60676 142 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 IFNA7P01567 189 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 AESQ08117 197 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 GLIPR1L1Q6UWM5 242 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 Q6ZQY7 126 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 ZC2HC1AQ96GY0 325 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 NABP2Q9BQ15 211 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 CCDC94Q9BW85 323 aaPredicted RBP0.01□□□□□ -2.41
VPS50-217ENST00000485140 NMNAT1Q9HAN9 279 aaPredicted RBP0.01□□□□□ -2.41
VPS50-217ENST00000485140 IGSF10Q6WRI0 2623 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 MEGF8Q7Z7M0 2845 aa0.01□□□□□ -2.41
VPS50-217ENST00000485140 TRAV27A0A087WT01 109 aa0□□□□□ -2.41
VPS50-217ENST00000485140 TAX1BP3O14907 124 aa0□□□□□ -2.41
VPS50-217ENST00000485140 LYPLA2O95372 231 aa0□□□□□ -2.41
VPS50-217ENST00000485140 HAND1O96004 215 aa0□□□□□ -2.41
VPS50-217ENST00000485140 HLA-EP13747 358 aa0□□□□□ -2.41
VPS50-217ENST00000485140 PTPRZ1P23471 2315 aaPredicted RBP0□□□□□ -2.41
VPS50-217ENST00000485140 RAB5CP51148 216 aa0□□□□□ -2.41
VPS50-217ENST00000485140 FANCMQ8IYD8 2048 aa0□□□□□ -2.41
VPS50-217ENST00000485140 OTUD6BQ8N6M0 293 aa0□□□□□ -2.41
VPS50-217ENST00000485140 OR5D16Q8NGK9 328 aa0□□□□□ -2.41
VPS50-217ENST00000485140 Q8TAT8 98 aa0□□□□□ -2.41
VPS50-217ENST00000485140 GGACTQ9BVM4 153 aa0□□□□□ -2.41
VPS50-217ENST00000485140 NPCDR1Q9BY65 106 aa0□□□□□ -2.41
VPS50-217ENST00000485140 BOKQ9UMX3 212 aaPredicted RBP0□□□□□ -2.41
VPS50-217ENST00000485140 ARL5AQ9Y689 179 aa0□□□□□ -2.41
VPS50-217ENST00000485140 ZFYVE26Q68DK2 2539 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 ZGRF1Q86YA3 2104 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 ADCY9O60503 1353 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 A0A096LPI6 279 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 GPR31O00270 319 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 C1orf134Q5TEV5 83 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 ARPINQ7Z6K5 226 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 S100A7AQ86SG5 101 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 IFT20Q8IY31 132 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 POP5Q969H6 163 aaKnown RBP-0.01□□□□□ -2.41
VPS50-217ENST00000485140 PPP1R14BQ96C90 147 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 ARL5BQ96KC2 179 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 SIGMAR1Q99720 223 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 UCK1Q9HA47 277 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 FREM3P0C091 2139 aa-0.01□□□□□ -2.41
VPS50-217ENST00000485140 MYLKQ15746 1914 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 NIPSNAP2O75323 286 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 TCRBP04435 133 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 CD14P08571 375 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 ATP5G3P48201 142 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 SERPINB9P50453 376 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 DYNLT3P51808 116 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 FXYD4P59646 89 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 EIF3IQ13347 325 aaKnown RBP-0.02□□□□□ -2.41
VPS50-217ENST00000485140 LIN52Q52LA3 116 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 LINC00299Q6ZSB3 139 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 Q86TA4 180 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 LRRC18Q8N456 261 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 PXT1Q8NFP0 134 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 OR4K15Q8NH41 348 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 CHCHD1Q96BP2 118 aaKnown RBP-0.02□□□□□ -2.41
VPS50-217ENST00000485140 HYLS1Q96M11 299 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 ZNF714Q96N38 554 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 COL7A1Q02388 2944 aa-0.02□□□□□ -2.41
VPS50-217ENST00000485140 SPTBP11277 2137 aa-0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms