RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 M0R1B8 84 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 SNAI2O43623 268 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 TNFAIP6P98066 277 aaPredicted RBP10.63□□□□□ -0.71
USP40-214ENST00000483519 IGFL2Q6UWQ7 119 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 SARAFQ96BY9 339 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 DYSFO75923 2080 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 ATP1A1-AS1Q5TC04 95 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 CIARTQ8N365 385 aaPredicted RBP10.63□□□□□ -0.71
USP40-214ENST00000483519 GATD1Q8NB37 220 aa10.63□□□□□ -0.71
USP40-214ENST00000483519 CEP295Q9C0D2 2601 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 CELSR3Q9NYQ7 3312 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 IGLV3-9A0A075B6K5 115 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 TMEM238C9JI98 176 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 SAP30O75446 220 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 CRYGCP07315 174 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 FGF6P10767 208 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 UQCRFS1P47985 274 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 VMA21Q3ZAQ7 101 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 PRNTQ86SH4 94 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 RPRMLQ8N4K4 120 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 C8orf46Q8TAG6 207 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 A0A1W2PPI3 338 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 H3BTX0 84 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 K7EP34 96 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 S100A7P31151 101 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 PAX2Q02962 417 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 TEX45Q8NA69 505 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 TMEM190Q8WZ59 177 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 RABAC1Q9UI14 185 aa10.62□□□□□ -0.71
USP40-214ENST00000483519 CACNA1GO43497 2377 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 TRAV8-1A0A0A6YYK1 113 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 PLP1P60201 277 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 HSD52Q0P140 79 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 LHFPL4Q7Z7J7 247 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 OR9G4Q8NGQ1 327 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 TRBV6-1A0A0K0K1D8 114 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 G3V4G9 280 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 NCR2O95944 276 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 ARMS2P0C7Q2 107 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 RIPPLY3P57055 190 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 MEF2CQ06413 473 aaPredicted RBP10.61□□□□□ -0.71
USP40-214ENST00000483519 Q6AWC8 147 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 TMEM116Q8NCL8 245 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 SRSF12Q8WXF0 261 aaKnown RBP10.61□□□□□ -0.71
USP40-214ENST00000483519 TMEM160Q9NX00 188 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 HIGD1AQ9Y241 93 aa10.61□□□□□ -0.71
USP40-214ENST00000483519 IGLV2-23P01705 113 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 GOLT1AQ6ZVE7 132 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 BOD1L2Q8IYS8 172 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 TMEM186Q96B77 213 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 H3BUT2 72 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 IGHV1-46P01743 117 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 FOXE3Q13461 319 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 LGALS9BQ3B8N2 356 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 TEX36Q5VZQ5 186 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 LGALS9CQ6DKI2 356 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 OR8A1Q8NGG7 326 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 ZC2HC1AQ96GY0 325 aa10.6□□□□□ -0.71
USP40-214ENST00000483519 A0A0G2JLM5 398 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 A1L4Q6 167 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 K7ENP7 123 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 SIVA1O15304 175 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 IGLV2-11P01706 119 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 HOXB4P17483 251 aaPredicted RBP10.59□□□□□ -0.71
USP40-214ENST00000483519 TIMM23BQ5SRD1 257 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 PVRIGQ6DKI7 326 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 OR5A1Q8NGJ0 315 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 OR2K2Q8NGT1 345 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 JMJD8Q96S16 334 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 TMEM14CQ9P0S9 112 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 OVOL3O00110 214 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 KIR3DS1Q14943 382 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 HCP5Q6MZN7 132 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 OR4X2Q8NGF9 303 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 NAV3Q8IVL0 2385 aa10.59□□□□□ -0.71
USP40-214ENST00000483519 NKX2-8O15522 239 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 APOBEC3AP31941 199 aaPredicted RBP10.58□□□□□ -0.72
USP40-214ENST00000483519 NGBQ9NPG2 151 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 NBEAQ8NFP9 2946 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 CCL3L1P16619 93 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 C3orf36Q3SXR2 165 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 RUSC1-AS1Q66K80 236 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 SHISA2Q6UWI4 295 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 TMEM75Q8N9X5 138 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 JKAMPQ9P055 326 aa10.58□□□□□ -0.72
USP40-214ENST00000483519 K7EQM0 130 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 MC5RP33032 325 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 IFI27P40305 119 aaPredicted RBP10.57□□□□□ -0.72
USP40-214ENST00000483519 LYZP61626 148 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 SRSF6Q13247 344 aaKnown RBP10.57□□□□□ -0.72
USP40-214ENST00000483519 OXLD1Q5BKU9 147 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 NEGR1Q7Z3B1 354 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 EXOC3-AS1Q8N2X6 119 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 ZADH2Q8N4Q0 377 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 TPSG1Q9NRR2 321 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 WT1P19544 449 aaPredicted RBP10.57□□□□□ -0.72
USP40-214ENST00000483519 LINC00311Q8N616 119 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 THYN1Q9P016 225 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 DCHS1Q96JQ0 3298 aa10.57□□□□□ -0.72
USP40-214ENST00000483519 CEACAM4O75871 244 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms