RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 CBLN1P23435 193 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 GALR1P47211 349 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 SYNJ2BPP57105 145 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 PDE6HQ13956 83 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 NSUN5P1Q3KNT7 163 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 C16orf54Q6UWD8 224 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 ALKAL2Q6UX46 152 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 UNQ9165/PRO28630Q6UXU0 137 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 C18orf65Q6ZTR6 163 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 LYPD1Q8N2G4 141 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 ARL6IP6Q8N6S5 226 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 LINC00482Q8N8I6 264 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 DLX4Q92988 240 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-225ENST00000481502 RAB24Q969Q5 203 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 C20orf24Q9BUV8 137 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 RHPN1-AS1Q9BWJ2 59 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 NKX6-2Q9C056 277 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-225ENST00000481502 TMEM167BQ9NRX6 74 aa6.29□□□□□ -1.4
SYNE1-225ENST00000481502 ZMAT5Q9UDW3 170 aaKnown RBP6.29□□□□□ -1.4
SYNE1-225ENST00000481502 A0A1W2PRX2 142 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 ZNF705EA8MWA4 302 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-225ENST00000481502 CHEK1O14757 476 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 WIPF1O43516 503 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 HIST1H1EP10412 219 aaKnown RBP6.28□□□□□ -1.4
SYNE1-225ENST00000481502 FOLR2P14207 255 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 SLURP1P55000 103 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 CMC4P56277 68 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-225ENST00000481502 DEFB136Q30KP8 78 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 CLLU1Q5K131 121 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 IL34Q6ZMJ4 242 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 OR8I2Q8N0Y5 310 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 FAM167A-AS1Q96KT0 104 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 OR51M1Q9H341 326 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 HRH4Q9H3N8 390 aa6.28□□□□□ -1.4
SYNE1-225ENST00000481502 A0A087X0K7 114 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 IGHV3-35A0A0C4DH35 117 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 MRPS12O15235 138 aaKnown RBP6.27□□□□□ -1.41
SYNE1-225ENST00000481502 CSN3P07498 182 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 FHITP49789 147 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 PAFAH1B2P68402 229 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 IFITM2Q01629 132 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 TM4SF20Q53R12 229 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 GCSAMLQ5JQS6 135 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 C9orf66Q5T8R8 295 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 FAM90A2PQ658T7 463 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 FAM122CQ6P4D5 195 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 FAM213BQ8TBF2 198 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 SFT2D1Q8WV19 159 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 GLMPQ8WWB7 406 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 TCEAL7Q9BRU2 100 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 SMDT1Q9H4I9 107 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 MED9Q9NWA0 146 aa6.27□□□□□ -1.41
SYNE1-225ENST00000481502 A0A1W2PRE2 83 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 MAP1LC3B2A6NCE7 125 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 TSPAN4O14817 238 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 NBEAP1P0C6P0 100 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 IGLC2P0DOY2 106 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 PSG9Q00887 426 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 ZNF726P1Q15940 193 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 LCN15Q6UWW0 184 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 SIGLEC15Q6ZMC9 328 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 MIR17HGQ75NE6 70 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 UHRF2Q96PU4 802 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 FAM110AQ9BQ89 295 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 SLC50A1Q9BRV3 221 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 PAXXQ9BUH6 204 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 SLC25A2Q9BXI2 301 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 MAP1LC3BQ9GZQ8 125 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 MANBALQ9NQG1 85 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 DOK5Q9P104 306 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 MLXQ9UH92 298 aa6.26□□□□□ -1.41
SYNE1-225ENST00000481502 OR7C2O60412 319 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 IFNA1P01562 189 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 IGLV1-51P01701 117 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 NMBP08949 121 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 GP9P14770 177 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 ATF4P18848 351 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-225ENST00000481502 DEFB114Q30KQ6 69 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 LINC01559Q495D7 138 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 FAM74A1Q5RGS3 127 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 PRR31Q5SQ13 230 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 SPAG8Q99932 426 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-225ENST00000481502 SCRT1Q9BWW7 348 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 SLC25A22Q9H936 323 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 NRN1Q9NPD7 142 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 PRELID1Q9Y255 219 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 RFNGQ9Y644 331 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 WNK1Q9H4A3 2382 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 STAB1Q9NY15 2570 aa6.25□□□□□ -1.41
SYNE1-225ENST00000481502 TRBV19A0A075B6N1 114 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 SERTM2A0A1B0GWG4 89 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 ZNF785A8K8V0 405 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 ISLRO14498 428 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 APOHP02749 345 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-225ENST00000481502 ARL14EPLP0DKL9 152 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 CD33P20138 364 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 GCHFRP30047 84 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 ID1P41134 155 aa6.24□□□□□ -1.41
SYNE1-225ENST00000481502 UBE2L3P68036 154 aaKnown RBP6.24□□□□□ -1.41
SYNE1-225ENST00000481502 SPATA31B1PQ5VZV4 182 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms