RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 LINC00336Q6ZUF6 198 aa8.69□□□□□ -1.02
SQSTM1-207ENST00000481335 SLC25A39Q9BZJ4 359 aaPredicted RBP8.69□□□□□ -1.02
SQSTM1-207ENST00000481335 PSENENQ9NZ42 101 aa8.69□□□□□ -1.02
SQSTM1-207ENST00000481335 DKK2Q9UBU2 259 aa8.69□□□□□ -1.02
SQSTM1-207ENST00000481335 PMS2P5A8MQ11 134 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 TSC22D2O75157 780 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 IGKV3-20P01619 116 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 IL5P05113 134 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 POLR2GP62487 172 aaKnown RBP eCLIP8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 BAK1Q16611 211 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 RRN3P1Q2M238 152 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 C4orf46Q504U0 113 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 PXDC1Q5TGL8 231 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 TMEM14EPQ6UXP3 125 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 IGF2BP2-AS1Q96M15 143 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 NIPSNAP3BQ9BS92 247 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 SHANK2-AS3Q9BTD1 123 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 RSG1Q9BU20 258 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 SLC35B3Q9H1N7 401 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 NPVFQ9HCQ7 196 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 HIGD1AQ9Y241 93 aa8.68□□□□□ -1.02
SQSTM1-207ENST00000481335 IGHV3OR16-12A0A075B7B8 117 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 A0A087X0K7 114 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 SMCO3A2RU48 225 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 SSSCA1O60232 199 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 HYPMO75409 117 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 LINC00869P0C866 280 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 CXCL2P19875 107 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 DEFB1P60022 68 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 AMTNQ6UX39 209 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 POM121L12Q8N7R1 296 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 OR10P1Q8NGE3 313 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 MITD1Q8WV92 249 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 C17orf77Q96MU5 243 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 GGACTQ9BVM4 153 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 MGAT4CQ9UBM8 478 aa8.67□□□□□ -1.02
SQSTM1-207ENST00000481335 LOC102723971A0A1B0GUV8 181 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 F6UB75 175 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 INSP01308 110 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 GATA2P23769 480 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 TSPOP30536 169 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 BTCP35070 178 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 FXYD7P58549 80 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 IAH1Q2TAA2 248 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 FAM222AQ5U5X8 452 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 TEPPQ6URK8 271 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 TMEM182Q6ZP80 229 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 ZNF546Q86UE3 836 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 C1orf158Q8N1D5 194 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 C20orf173Q96LM9 149 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 SDHCQ99643 169 aaPredicted RBP8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 SCRT1Q9BWW7 348 aa8.66□□□□□ -1.02
SQSTM1-207ENST00000481335 IL7P13232 177 aa8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 CNN1P51911 297 aaKnown RBP8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 EMP1P54849 157 aa8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 ZNF767PQ75MW2 155 aa8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 TMEM256Q8N2U0 113 aa8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 ZBTB8BQ8NAP8 495 aaPredicted RBP8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 OR11H7Q8NGC8 314 aa8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 TMEM208Q9BTX3 173 aa8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 FLVCR2Q9UPI3 526 aa8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 YTHDF2Q9Y5A9 579 aaKnown RBP8.65□□□□□ -1.02
SQSTM1-207ENST00000481335 TRAV8-2A0A0B4J237 113 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 LYRM9A8MSI8 78 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 OR5G3P0C626 314 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 METTL15P1P0C7V9 234 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 ANXA7P20073 488 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 LCN15Q6UWW0 184 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 ZNF738Q8NE65 137 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 C20orf85Q9H1P6 137 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 ARV1Q9H2C2 271 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 NDUFA13Q9P0J0 144 aa8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 RCL1Q9Y2P8 373 aaKnown RBP8.64□□□□□ -1.03
SQSTM1-207ENST00000481335 BOLA2-SMG1P6H3BVE0 249 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 CRXO43186 299 aaPredicted RBP8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 SCGB1D2O95969 90 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 CXCL3P19876 107 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 DAD1P61803 113 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 FGL1Q08830 312 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 LGALS9BQ3B8N2 356 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 RNF212Q495C1 297 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 C15orf53Q8NAA6 179 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 SLC50A1Q9BRV3 221 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 ARL6Q9H0F7 186 aa8.63□□□□□ -1.03
SQSTM1-207ENST00000481335 C7orf66A4D0T2 115 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 GOSR2O14653 212 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 MRPS12O15235 138 aaKnown RBP8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 LYRM1O43325 122 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 FAM3BP58499 235 aaPredicted RBP8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 RRAS2P62070 204 aaPredicted RBP8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 ZNF846Q147U1 533 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 PSG3Q16557 428 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 SPINK13Q1W4C9 94 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 BPIFA4PQ86YQ2 179 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 RNF182Q8N6D2 247 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 OR8A1Q8NGG7 326 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 LRRC20Q8TCA0 184 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 UHRF2Q96PU4 802 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 C20orf144Q9BQM9 153 aa8.62□□□□□ -1.03
SQSTM1-207ENST00000481335 NACAE9PAV3 2078 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms