RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 PFDN5Q99471 154 aa5.1□□□□□ -1.59
USP48-208ENST00000479177 PUS1Q9Y606 427 aaKnown RBP eCLIP5.1□□□□□ -1.59
USP48-208ENST00000479177 IGHV4OR15-8A0A075B7B6 117 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 A0A087WW49 117 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 TRAV1-1A0A0B4J248 108 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 IGHV3-35A0A0C4DH35 117 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 A0A1B0GUS0 222 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 MAP1LC3B2A6NCE7 125 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 H3BRN7 92 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 I3L521 148 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 HYPMO75409 117 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 EIF3GO75821 320 aaKnown RBP eCLIP5.09□□□□□ -1.59
USP48-208ENST00000479177 CD28P10747 220 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 CDX1P47902 265 aaPredicted RBP5.09□□□□□ -1.59
USP48-208ENST00000479177 RAB14P61106 215 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 RHOBP62745 196 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 BLOC1S1P78537 153 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 USF2Q15853 346 aaPredicted RBP5.09□□□□□ -1.59
USP48-208ENST00000479177 KHDC1LQ5JSQ8 128 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 MORN5Q5VZ52 161 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 TOMM20LQ6UXN7 152 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 C18orf65Q6ZTR6 163 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 MIR17HGQ75NE6 70 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 OR1L4Q8NGR5 311 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 OR1B1Q8NGR6 318 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 LYPD6BQ8NI32 183 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 Q8WTZ3 238 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 GATAD1Q8WUU5 269 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 C4orf3Q8WVX3 66 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 MBD3L1Q8WWY6 194 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 TMEM190Q8WZ59 177 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 RNF2Q99496 336 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 PBDC1Q9BVG4 233 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 C19orf24Q9BVV8 132 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 MRPL32Q9BYC8 188 aaKnown RBP5.09□□□□□ -1.59
USP48-208ENST00000479177 ACTR3CQ9C0K3 210 aaPredicted RBP5.09□□□□□ -1.59
USP48-208ENST00000479177 MAP1LC3BQ9GZQ8 125 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 SEPSECSQ9HD40 501 aaKnown RBP5.09□□□□□ -1.59
USP48-208ENST00000479177 DNAJC4Q9NNZ3 241 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 MRPL27Q9P0M9 148 aaKnown RBP5.09□□□□□ -1.59
USP48-208ENST00000479177 PEF1Q9UBV8 284 aaKnown RBP5.09□□□□□ -1.59
USP48-208ENST00000479177 FUT9Q9Y231 359 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 HIGD1AQ9Y241 93 aa5.09□□□□□ -1.59
USP48-208ENST00000479177 FBN1P35555 2871 aaKnown RBP5.09□□□□□ -1.6
USP48-208ENST00000479177 NOTCH3Q9UM47 2321 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 GAGE12BA1L429 117 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 GAGE12HA6NDE8 117 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 DIRC3C9JPN6 131 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 NDUFA4O00483 81 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 GGCTO75223 188 aaKnown RBP5.08□□□□□ -1.6
USP48-208ENST00000479177 STAG3L2P0CL84 134 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 STAG3L3P0CL85 134 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 ORM2P19652 201 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 GCSHP23434 173 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 KRTAP10-3P60369 221 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 FAM78BQ5VT40 261 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 C10orf113Q5VZT2 155 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 HIST2H2BDQ6DRA6 164 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 LCN15Q6UWW0 184 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 C11orf44Q8N8P7 122 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 KLHL30-AS1Q8NEE0 82 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 SFT2D1Q8WV19 159 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 FAM167A-AS1Q96KT0 104 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 UHRF2Q96PU4 802 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 CITED2Q99967 270 aaPredicted RBP5.08□□□□□ -1.6
USP48-208ENST00000479177 SHANK2-AS3Q9BTD1 123 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 SLC25A39Q9BZJ4 359 aaPredicted RBP5.08□□□□□ -1.6
USP48-208ENST00000479177 HRH4Q9H3N8 390 aa5.08□□□□□ -1.6
USP48-208ENST00000479177 IGHV3OR16-8A0A075B7F1 116 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 TRAV5A0A0B4J249 113 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 A0A1B0GV50 99 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 A0A1W2PPV4 95 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 LINC00862A6NCI5 91 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 TEX46H3BTG2 121 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 HMGB3O15347 200 aaKnown RBP5.07□□□□□ -1.6
USP48-208ENST00000479177 HBE1P02100 147 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 HSPB1P04792 205 aaKnown RBP5.07□□□□□ -1.6
USP48-208ENST00000479177 ARL14EPLP0DKL9 152 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 C8orf88P0DMB2 117 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 GP9P14770 177 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 HOXD3P31249 432 aaPredicted RBP5.07□□□□□ -1.6
USP48-208ENST00000479177 FGF8P55075 233 aaPredicted RBP5.07□□□□□ -1.6
USP48-208ENST00000479177 TAS2R45P59539 299 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 FHL3Q13643 280 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 DEFB136Q30KP8 78 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 KRTAP24-1Q3LI83 254 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 KHDC3LQ587J8 217 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 UNQ9165/PRO28630Q6UXU0 137 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 IL34Q6ZMJ4 242 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 LINC00305Q7Z4B0 112 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 PRIMA1Q86XR5 153 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 GPHB5Q86YW7 130 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 SCRT1Q9BWW7 348 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 SLC25A2Q9BXI2 301 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 MED9Q9NWA0 146 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 TECRQ9NZ01 308 aaKnown RBP5.07□□□□□ -1.6
USP48-208ENST00000479177 FAM30AQ9NZY2 134 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 RABAC1Q9UI14 185 aa5.07□□□□□ -1.6
USP48-208ENST00000479177 TSSC4Q9Y5U2 329 aaPredicted RBP5.07□□□□□ -1.6
USP48-208ENST00000479177 ZNF98A6NK75 572 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms