RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, human

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-DMA-208	ENST00000477541	ZNF835	Q9Y2P0	537 aa		10.82	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	URB1	O60287	2271 aa	Known RBP	10.82	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	SPTA1	P02549	2419 aa		10.82	□□□□□ -0.68
HLA-DMA-208	ENST00000477541		J3QKU1	62 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CEACAM4	O75871	244 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CD40	P25942	277 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	GPR183	P32249	361 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	MRPL36	Q9P0J6	103 aa	Known RBP	10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	hDV102S1	A0JD36	115 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541		K7ERU9	68 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	NDUFB3	O43676	98 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	RBPJ	Q06330	500 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	ZNF493	Q6ZR52	646 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	ZNF843	Q8N446	348 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	NEU4	Q8WWR8	484 aa	Predicted RBP	10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CST9L	Q9H4G1	147 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	KAAG1	Q9UBP8	84 aa		10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	F11R	Q9Y624	299 aa	Known RBP	10.81	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	PPIAL4E	A0A075B759	164 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	SERTM2	A0A1B0GWG4	89 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	SH2D7	A6NKC9	451 aa	Predicted RBP	10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	C17orf100	A8MU93	164 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	PPIAL4D	F5H284	164 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	NKX2-8	O15522	239 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	SLC25A17	O43808	307 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	PLAU	P00749	431 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CRYGB	P07316	175 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	PPIAL4F	P0DN26	164 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	MRGPRG-AS1	Q2M3A8	158 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	OCIAD2	Q56VL3	154 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	C10orf55	Q5SWW7	151 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	BPIFA4P	Q86YQ2	179 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	RPRML	Q8N4K4	120 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	ZADH2	Q8N4Q0	377 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	ZNF747	Q9BV97	191 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	NPFFR1	Q9GZQ6	430 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	ZNRD1	Q9P1U0	126 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	RPH3AL	Q9UNE2	315 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	KNTC1	P50748	2209 aa		10.8	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	MUC21	A0A0G2JKD1	596 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	MUC21	A0A140T8X8	626 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	TNFRSF13B	O14836	293 aa	Predicted RBP	10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	SIVA1	O15304	175 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	IGLV2-11	P01706	119 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CCL3L1	P16619	93 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	MUC21	Q5SSG8	566 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	TMEM108	Q6UXF1	575 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541		Q6ZVH6	145 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	FA2H	Q7L5A8	372 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	RNF5	Q99942	180 aa		10.79	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	FBLL1	A6NHQ2	334 aa	Known RBP	10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	TMEM178B	H3BS89	294 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	FAM87A	P0C7U9	286 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	FTH1P19	P0C7X4	201 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CEACAM8	P31997	349 aa	Predicted RBP	10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	DLX6	P56179	175 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	ARF6	P62330	175 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	IGFL3	Q6UXB1	125 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	LINC00173	Q6ZV60	143 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CIART	Q8N365	385 aa	Predicted RBP	10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	OR9G4	Q8NGQ1	327 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	TMUB1	Q9BVT8	246 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	FAM215A	Q9Y5M1	114 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541		A6NDN8	102 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	VSTM5	A8MXK1	200 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	OVOL3	O00110	214 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	THBD	P07204	575 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	IGLC1	P0CG04	106 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	CEACAM3	P40198	252 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	LGALS9B	Q3B8N2	356 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	TMEM155	Q4W5P6	130 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	LGALS9C	Q6DKI2	356 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	IGF2-AS	Q6U949	168 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	GTF2H5	Q6ZYL4	71 aa		10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	10.78	□□□□□ -0.68
HLA-DMA-208	ENST00000477541	OR2T8	A6NH00	312 aa		10.77	□□□□□ -0.69
HLA-DMA-208	ENST00000477541		K7EM74	188 aa		10.77	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	TMEM97	Q5BJF2	176 aa		10.77	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	ASPHD1	Q5U4P2	390 aa		10.77	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	PRORY	Q9H606	182 aa		10.77	□□□□□ -0.69
HLA-DMA-208	ENST00000477541		U3KQK5	164 aa		10.77	□□□□□ -0.69
HLA-DMA-208	ENST00000477541		M0QZ24	198 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	PSG9	Q00887	426 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	PDE6H	Q13956	83 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	C2orf91	Q6ZV80	131 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	GOLT1A	Q6ZVE7	132 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	PRNT	Q86SH4	94 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	PRSS3P2	Q8NHM4	247 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	SHANK2-AS3	Q9BTD1	123 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	TMEM133	Q9H2Q1	129 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	NGB	Q9NPG2	151 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	SIGLEC9	Q9Y336	463 aa		10.76	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	TRBV19	A0A075B6N1	114 aa		10.75	□□□□□ -0.69
HLA-DMA-208	ENST00000477541		H3BRM9	83 aa		10.75	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	IGHV1-8	P0DP01	117 aa		10.75	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	LINC01559	Q495D7	138 aa		10.75	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	LDLRAD2	Q5SZI1	272 aa		10.75	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	AMMECR1L	Q6DCA0	310 aa		10.75	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	ALKBH2	Q6NS38	261 aa		10.75	□□□□□ -0.69
HLA-DMA-208	ENST00000477541	COX8C	Q7Z4L0	72 aa		10.75	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms