RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PSG9Q00887 426 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 IGFL4Q6B9Z1 124 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 PATE2Q6UY27 113 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 SHANK2-AS3Q9BTD1 123 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 TMEM147Q9BVK8 224 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 SLC25A39Q9BZJ4 359 aaPredicted RBP13.28□□□□□ -0.28
COL7A1-209ENST00000474432 DOK5Q9P104 306 aa13.28□□□□□ -0.28
COL7A1-209ENST00000474432 SMCO3A2RU48 225 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 SMIM9A6NGZ8 99 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 K7EPK0 472 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 IL5P05113 134 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 TAS2R30P59541 319 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 RRAS2P62070 204 aaPredicted RBP13.27□□□□□ -0.29
COL7A1-209ENST00000474432 SAMD13Q5VXD3 122 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 EBLN2Q6P2I7 272 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 RNF126Q9BV68 326 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 C20orf85Q9H1P6 137 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 RPRMQ9NS64 109 aa13.27□□□□□ -0.29
COL7A1-209ENST00000474432 DEFB131BA0A096LNP1 70 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 C7orf66A4D0T2 115 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 FNDC10F2Z333 226 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 TSC22D2O75157 780 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 MBPP02686 304 aaPredicted RBP13.26□□□□□ -0.29
COL7A1-209ENST00000474432 LINC00869P0C866 280 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 CNPY1Q3B7I2 92 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 GPR82Q96P67 336 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 UHRF2Q96PU4 802 aa13.26□□□□□ -0.29
COL7A1-209ENST00000474432 IGHV3OR16-12A0A075B7B8 117 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 CCSO14618 274 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 MRPS12O15235 138 aaKnown RBP13.25□□□□□ -0.29
COL7A1-209ENST00000474432 LYRM1O43325 122 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 SCGB1D2O95969 90 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 AMBPP02760 352 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 RNF182Q8N6D2 247 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 C11orf1Q9H5F2 150 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 NPVFQ9HCQ7 196 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 PLA2G2EQ9NZK7 142 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 GSKIPQ9P0R6 139 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 HIGD1AQ9Y241 93 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 RFNGQ9Y644 331 aa13.25□□□□□ -0.29
COL7A1-209ENST00000474432 CRXO43186 299 aaPredicted RBP13.24□□□□□ -0.29
COL7A1-209ENST00000474432 HYPMO75409 117 aa13.24□□□□□ -0.29
COL7A1-209ENST00000474432 TCRBP04435 133 aa13.24□□□□□ -0.29
COL7A1-209ENST00000474432 EMP1P54849 157 aa13.24□□□□□ -0.29
COL7A1-209ENST00000474432 SELENOTP62341 195 aa13.24□□□□□ -0.29
COL7A1-209ENST00000474432 OR10P1Q8NGE3 313 aa13.24□□□□□ -0.29
COL7A1-209ENST00000474432 DKK2Q9UBU2 259 aa13.24□□□□□ -0.29
COL7A1-209ENST00000474432 TMEM189A5PLL7 270 aa13.23□□□□□ -0.29
COL7A1-209ENST00000474432 SPART-AS1P0CW21 52 aa13.23□□□□□ -0.29
COL7A1-209ENST00000474432 CNN1P51911 297 aaKnown RBP13.23□□□□□ -0.29
COL7A1-209ENST00000474432 SLC38A11Q08AI6 406 aa13.23□□□□□ -0.29
COL7A1-209ENST00000474432 OR11H7Q8NGC8 314 aa13.23□□□□□ -0.29
COL7A1-209ENST00000474432 SEC22CQ9BRL7 303 aa13.23□□□□□ -0.29
COL7A1-209ENST00000474432 NDUFA13Q9P0J0 144 aa13.23□□□□□ -0.29
COL7A1-209ENST00000474432 A0A087X0K7 114 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 OR5G3P0C626 314 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 RPL7P18124 248 aaKnown RBP13.22□□□□□ -0.29
COL7A1-209ENST00000474432 RAP2BP61225 183 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 FAM222AQ5U5X8 452 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 TEPPQ6URK8 271 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 IGF2BP2-AS1Q96M15 143 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 ARL6Q9H0F7 186 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 GOLT1BQ9Y3E0 138 aa13.22□□□□□ -0.29
COL7A1-209ENST00000474432 TRAV6A0A075B6T7 132 aa13.21□□□□□ -0.29
COL7A1-209ENST00000474432 PRM2P04554 102 aa13.21□□□□□ -0.29
COL7A1-209ENST00000474432 CXCL3P19876 107 aa13.21□□□□□ -0.29
COL7A1-209ENST00000474432 S100A7P31151 101 aa13.21□□□□□ -0.29
COL7A1-209ENST00000474432 FGL1Q08830 312 aa13.21□□□□□ -0.29
COL7A1-209ENST00000474432 ZNF431Q8TF32 576 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-209ENST00000474432 MGST2Q99735 147 aa13.21□□□□□ -0.29
COL7A1-209ENST00000474432 ARV1Q9H2C2 271 aa13.21□□□□□ -0.29
COL7A1-209ENST00000474432 HECTD4Q9Y4D8 3996 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 LOC102723971A0A1B0GUV8 181 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 M0R2Z0 102 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 AGPAT2O15120 278 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 IL15RAQ13261 267 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 SPINK13Q1W4C9 94 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 GGACTQ9BVM4 153 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 NUDT15Q9NV35 164 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 MGAT4CQ9UBM8 478 aa13.2□□□□□ -0.3
COL7A1-209ENST00000474432 YTHDF2Q9Y5A9 579 aaKnown RBP13.2□□□□□ -0.3
COL7A1-209ENST00000474432 DNAH2Q9P225 4427 aa13.19□□□□□ -0.3
COL7A1-209ENST00000474432 DUSP14O95147 198 aaKnown RBP13.19□□□□□ -0.3
COL7A1-209ENST00000474432 HBE1P02100 147 aa13.19□□□□□ -0.3
COL7A1-209ENST00000474432 PRB4P10163 310 aaPredicted RBP13.19□□□□□ -0.3
COL7A1-209ENST00000474432 MORN5Q5VZ52 161 aa13.19□□□□□ -0.3
COL7A1-209ENST00000474432 TMEM37Q8WXS4 190 aa13.19□□□□□ -0.3
COL7A1-209ENST00000474432 OXA1LQ15070 435 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 PSG3Q16557 428 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 RRN3P1Q2M238 152 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 ZNF546Q86UE3 836 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 OR8A1Q8NGG7 326 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 NIPSNAP3BQ9BS92 247 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 NDUFAF3Q9BU61 184 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 CCDC32Q9BV29 185 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 LSM5Q9Y4Y9 91 aaKnown RBP13.18□□□□□ -0.3
COL7A1-209ENST00000474432 FAT2Q9NYQ8 4349 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 DNAH17Q9UFH2 4485 aa13.18□□□□□ -0.3
COL7A1-209ENST00000474432 GOSR2O14653 212 aa13.17□□□□□ -0.3
COL7A1-209ENST00000474432 PXDC1Q5TGL8 231 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms