RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 C4orf46Q504U0 113 aa11.91□□□□□ -0.5
USP40-212ENST00000473191 AMTNQ6UX39 209 aa11.91□□□□□ -0.5
USP40-212ENST00000473191 NEU1Q99519 415 aa11.91□□□□□ -0.5
USP40-212ENST00000473191 TMEM147Q9BVK8 224 aa11.91□□□□□ -0.5
USP40-212ENST00000473191 SLC25A39Q9BZJ4 359 aaPredicted RBP11.91□□□□□ -0.5
USP40-212ENST00000473191 RCL1Q9Y2P8 373 aaKnown RBP11.91□□□□□ -0.5
USP40-212ENST00000473191 GALR1P47211 349 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 FGL1Q08830 312 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 TMEM14EPQ6UXP3 125 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 PATE2Q6UY27 113 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 SMIM8Q96KF7 97 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 CLUHP3Q96NS8 147 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 SLC45A2Q9UMX9 530 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 FAT2Q9NYQ8 4349 aa11.9□□□□□ -0.5
USP40-212ENST00000473191 CFDP00746 253 aaPredicted RBP11.89□□□□□ -0.51
USP40-212ENST00000473191 IFNA21P01568 189 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 IL5P05113 134 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 LINC00869P0C866 280 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 SLC38A11Q08AI6 406 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 IAH1Q2TAA2 248 aaPredicted RBP11.89□□□□□ -0.51
USP40-212ENST00000473191 EBLN2Q6P2I7 272 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 ZBTB8BQ8NAP8 495 aaPredicted RBP11.89□□□□□ -0.51
USP40-212ENST00000473191 SHANK2-AS3Q9BTD1 123 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 RNF126Q9BV68 326 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 RPRMQ9NS64 109 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 GSKIPQ9P0R6 139 aa11.89□□□□□ -0.51
USP40-212ENST00000473191 HECTD4Q9Y4D8 3996 aa11.88□□□□□ -0.51
USP40-212ENST00000473191 A8MTW9 85 aa11.88□□□□□ -0.51
USP40-212ENST00000473191 CRXO43186 299 aaPredicted RBP11.88□□□□□ -0.51
USP40-212ENST00000473191 MBPP02686 304 aaPredicted RBP11.88□□□□□ -0.51
USP40-212ENST00000473191 AMBPP02760 352 aa11.88□□□□□ -0.51
USP40-212ENST00000473191 SNRPCP09234 159 aaKnown RBP11.88□□□□□ -0.51
USP40-212ENST00000473191 CNN1P51911 297 aaKnown RBP11.88□□□□□ -0.51
USP40-212ENST00000473191 FAM222AQ5U5X8 452 aa11.88□□□□□ -0.51
USP40-212ENST00000473191 MITD1Q8WV92 249 aa11.88□□□□□ -0.51
USP40-212ENST00000473191 C20orf85Q9H1P6 137 aa11.88□□□□□ -0.51
USP40-212ENST00000473191 DKK2Q9UBU2 259 aa11.88□□□□□ -0.51
USP40-212ENST00000473191 M0R2Z0 102 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 OR5G3P0C626 314 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 MEOX2P50222 304 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 DLK1P80370 383 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 SPINK13Q1W4C9 94 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 OR11H7Q8NGC8 314 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 HIGD1AQ9Y241 93 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 YTHDF2Q9Y5A9 579 aaKnown RBP11.87□□□□□ -0.51
USP40-212ENST00000473191 RFNGQ9Y644 331 aa11.87□□□□□ -0.51
USP40-212ENST00000473191 TRAV6A0A075B6T7 132 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 C7orf66A4D0T2 115 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 SMIM9A6NGZ8 99 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 MRPS12O15235 138 aaKnown RBP11.86□□□□□ -0.51
USP40-212ENST00000473191 HYPMO75409 117 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 SPART-AS1P0CW21 52 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 PLP1P60201 277 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 MORN5Q5VZ52 161 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 SPATA31B1PQ5VZV4 182 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 C7orf50Q9BRJ6 194 aaKnown RBP11.86□□□□□ -0.51
USP40-212ENST00000473191 SEC22CQ9BRL7 303 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 ARL6Q9H0F7 186 aa11.86□□□□□ -0.51
USP40-212ENST00000473191 TRAV12-2A0A075B6T6 113 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 LOC102723971A0A1B0GUV8 181 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 CENPXA8MT69 81 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 LYRM1O43325 122 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 RAP2BP61225 183 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 BAP18Q8IXM2 172 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 OR10P1Q8NGE3 313 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 NPVFQ9HCQ7 196 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 GOLT1BQ9Y3E0 138 aa11.85□□□□□ -0.51
USP40-212ENST00000473191 DNAH17Q9UFH2 4485 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 ZNF705GA8MUZ8 300 aaPredicted RBP11.84□□□□□ -0.51
USP40-212ENST00000473191 TSC22D2O75157 780 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 IGF2BP2-AS1Q96M15 143 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 GPR82Q96P67 336 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 MGST2Q99735 147 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 NIPSNAP3BQ9BS92 247 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 ARV1Q9H2C2 271 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 C11orf1Q9H5F2 150 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 HERC2O95714 4834 aa11.84□□□□□ -0.51
USP40-212ENST00000473191 TMEM189A5PLL7 270 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 H3BTX0 84 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 AGPAT2O15120 278 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 HBE1P02100 147 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 TCRBP04435 133 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 HTN3P15516 51 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 CXCL3P19876 107 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 AZU1P20160 251 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 SAMD13Q5VXD3 122 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 TEPPQ6URK8 271 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 LINC00299Q6ZSB3 139 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 ZNF738Q8NE65 137 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 NDUFAF3Q9BU61 184 aa11.83□□□□□ -0.52
USP40-212ENST00000473191 LSM5Q9Y4Y9 91 aaKnown RBP11.83□□□□□ -0.52
USP40-212ENST00000473191 A0A087X0K7 114 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 FAM25EA8MYX2 175 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 K7EPK0 472 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 M0R2N4 97 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 RPL7P18124 248 aaKnown RBP11.82□□□□□ -0.52
USP40-212ENST00000473191 TAS2R30P59541 319 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 FCN2Q15485 313 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 RRN3P1Q2M238 152 aa11.82□□□□□ -0.52
USP40-212ENST00000473191 S100ZQ8WXG8 99 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms