RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RAP2BP61225 183 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 DLK1P80370 383 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 PSG9Q00887 426 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 FGL1Q08830 312 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 C12orf74Q32Q52 190 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 CNPY1Q3B7I2 92 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 SPATA31B1PQ5VZV4 182 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 TMEM14EPQ6UXP3 125 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 ZNF705AQ6ZN79 300 aaPredicted RBP11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 C17orf77Q96MU5 243 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 GPR82Q96P67 336 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 SLC25A39Q9BZJ4 359 aaPredicted RBP11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 MGAT4CQ9UBM8 478 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 HIGD1AQ9Y241 93 aa11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 RCL1Q9Y2P8 373 aaKnown RBP11.3□□□□□ -0.6
CCDC88B-205ENST00000472524 IGHV4-4A0A075B6R2 117 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 TRAV6A0A075B6T7 132 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 ZNF705FA8MVS1 300 aaPredicted RBP11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 OR5G3P0C626 314 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 ZNF705DP0CH99 300 aaPredicted RBP11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 ZNF705BP0CI00 300 aaPredicted RBP11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 IGFL4Q6B9Z1 124 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 OR10P1Q8NGE3 313 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 CLUHP3Q96NS8 147 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 NEU1Q99519 415 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 NDUFA13Q9P0J0 144 aa11.29□□□□□ -0.6
CCDC88B-205ENST00000472524 DEFB131BA0A096LNP1 70 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 FAM25EA8MYX2 175 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 TSC22D2O75157 780 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 HYPMO75409 117 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 MBPP02686 304 aaPredicted RBP11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 TCRBP04435 133 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 SELENOTP62341 195 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 SLC38A11Q08AI6 406 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 UHRF2Q96PU4 802 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 SHANK2-AS3Q9BTD1 123 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 NPVFQ9HCQ7 196 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 GOLT1BQ9Y3E0 138 aa11.28□□□□□ -0.6
CCDC88B-205ENST00000472524 TAS2R30P59541 319 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 ARL16Q0P5N6 197 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 ZNF846Q147U1 533 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 TEPPQ6URK8 271 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 RNF182Q8N6D2 247 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 SEC22CQ9BRL7 303 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 ARL6Q9H0F7 186 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 NUDT15Q9NV35 164 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 LSM5Q9Y4Y9 91 aaKnown RBP11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 RFNGQ9Y644 331 aa11.27□□□□□ -0.61
CCDC88B-205ENST00000472524 KIAA1109Q2LD37 5005 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 TRAV8-2A0A0B4J237 113 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 C7orf66A4D0T2 115 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 TMEM189A5PLL7 270 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 SMIM9A6NGZ8 99 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 FNDC10F2Z333 226 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 L7N2F9 121 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 RPL7P18124 248 aaKnown RBP11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 PLP1P60201 277 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 VAMP2P63027 116 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 ZNF738Q8NE65 137 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 RNF126Q9BV68 326 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 HECTD4Q9Y4D8 3996 aa11.26□□□□□ -0.61
CCDC88B-205ENST00000472524 C5orf51A6NDU8 294 aa11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 HBE1P02100 147 aa11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 SPART-AS1P0CW21 52 aa11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 BCAP31P51572 246 aa11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 CNN1P51911 297 aaKnown RBP11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 C1orf158Q8N1D5 194 aa11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 ZNF431Q8TF32 576 aaPredicted RBP11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 ARV1Q9H2C2 271 aa11.25□□□□□ -0.61
CCDC88B-205ENST00000472524 LOC102723971A0A1B0GUV8 181 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 A8MTW9 85 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 K7EPK0 472 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 GOSR2O14653 212 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 DUSP14O95147 198 aaKnown RBP11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 AMBPP02760 352 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 H2AFB2P0C5Z0 115 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 SPINK13Q1W4C9 94 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 AMTNQ6UX39 209 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 PATE2Q6UY27 113 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 S100A7AQ86SG5 101 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 ZNF546Q86UE3 836 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 IGF2BP2-AS1Q96M15 143 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 TMEM208Q9BTX3 173 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 CCDC32Q9BV29 185 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 PCLOQ9Y6V0 5065 aa11.24□□□□□ -0.61
CCDC88B-205ENST00000472524 M0R2Z0 102 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 AGPAT2O15120 278 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 PRB4P10163 310 aaPredicted RBP11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 RRN3P1Q2M238 152 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 FAM222AQ5U5X8 452 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 C12orf45Q8N5I9 185 aaPredicted RBP11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 OR11H7Q8NGC8 314 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 LRRC20Q8TCA0 184 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 MGST2Q99735 147 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 GGACTQ9BVM4 153 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 DKK2Q9UBU2 259 aa11.23□□□□□ -0.61
CCDC88B-205ENST00000472524 A0A087X0K7 114 aa11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 INSP01308 110 aa11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 SNRPCP09234 159 aaKnown RBP11.22□□□□□ -0.61
CCDC88B-205ENST00000472524 CAV2P51636 162 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms