RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 FOXC1Q12948 553 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 ZNF664Q8N3J9 261 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 PTPRBP23467 1997 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 ANKHD1Q8IWZ3 2542 aaKnown RBP11.04□□□□□ -0.64
COL6A3-209ENST00000472056 C1QL2Q7Z5L3 287 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 SLC22A18ASQ8N1D0 253 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 CCL19Q99731 98 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 TIMM21Q9BVV7 248 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 PSG1P11464 419 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 MYF5P13349 255 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 SRSF3P84103 164 aaKnown RBP11.04□□□□□ -0.64
COL6A3-209ENST00000472056 GPHA2Q96T91 129 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 C9orf139Q6ZV77 190 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 C1QTNF4Q9BXJ3 329 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 GREM1O60565 184 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 PCOLCEQ15113 449 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 GFI1BQ5VTD9 330 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 DEFB124Q8NES8 71 aa11.04□□□□□ -0.64
COL6A3-209ENST00000472056 SONP18583 2426 aaKnown RBP11.03□□□□□ -0.64
COL6A3-209ENST00000472056 PAX4O43316 350 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 HLA-DMBP28068 263 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 SLAQ13239 276 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 A0A087X0K7 114 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 C3orf79P0CE67 100 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 COX6B1P14854 86 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 GAGE2AQ6NT46 116 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 SP7Q8TDD2 431 aaPredicted RBP11.03□□□□□ -0.64
COL6A3-209ENST00000472056 RFNGQ9Y644 331 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 LY6G5BQ8NDX9 201 aa11.03□□□□□ -0.64
COL6A3-209ENST00000472056 H0YIZ8 118 aa11.02□□□□□ -0.64
COL6A3-209ENST00000472056 IL9P15248 144 aa11.02□□□□□ -0.64
COL6A3-209ENST00000472056 CDKN1BP46527 198 aa11.02□□□□□ -0.64
COL6A3-209ENST00000472056 ZNF784Q8NCA9 323 aaPredicted RBP11.02□□□□□ -0.64
COL6A3-209ENST00000472056 K7EP13 123 aa11.02□□□□□ -0.64
COL6A3-209ENST00000472056 USMG5Q96IX5 58 aa11.02□□□□□ -0.64
COL6A3-209ENST00000472056 IGHV2OR16-5A0A0B4J2B6 119 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 STHQ8IWL8 128 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 MINOS1Q5TGZ0 78 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 C1orf43Q9BWL3 253 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 MINOS1-NBL1R4GNA1 71 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 IGKV3D-20A0A0C4DH25 116 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 ZNF492Q9P255 531 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 FAM208BQ5VWN6 2430 aa11.02□□□□□ -0.65
COL6A3-209ENST00000472056 FBXL15Q9H469 300 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 K7EP34 96 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 ERCC8Q13216 396 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 CRYBA2P53672 197 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 RPL36AP83881 106 aaKnown RBP11.01□□□□□ -0.65
COL6A3-209ENST00000472056 RPL36ALQ969Q0 106 aaKnown RBP11.01□□□□□ -0.65
COL6A3-209ENST00000472056 ZNF71Q9NQZ8 489 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-209ENST00000472056 A6NNC1 897 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 ATP5J2P56134 94 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 OR13A1Q8NGR1 328 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 MBNL3Q9NUK0 354 aaKnown RBP11.01□□□□□ -0.65
COL6A3-209ENST00000472056 C17orf100A8MU93 164 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 IGKV3-20P01619 116 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 COX8AP10176 69 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 PAX8Q06710 450 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 ANAPC10Q9UM13 185 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 NDUFB8O95169 186 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 CECR9P0C854 216 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 CYTL1Q9NRR1 136 aa11.01□□□□□ -0.65
COL6A3-209ENST00000472056 RPP25LQ8N5L8 163 aaKnown RBP11□□□□□ -0.65
COL6A3-209ENST00000472056 RHODO00212 210 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 GTSCR1Q86UQ5 136 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 DSCR8Q96T75 97 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 FAM219BQ5XKK7 198 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE12HA6NDE8 117 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 TCRAP04437 139 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 EGR2P11161 476 aaPredicted RBP11□□□□□ -0.65
COL6A3-209ENST00000472056 R3HDMLQ9H3Y0 253 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 FCN3O75636 299 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 SUPT4H1P63272 117 aaKnown RBP11□□□□□ -0.65
COL6A3-209ENST00000472056 WBP1Q96G27 269 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 C9JAW5 83 aa11□□□□□ -0.65
COL6A3-209ENST00000472056 NOTCH4Q99466 2003 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 RPUSD1Q9UJJ7 312 aaKnown RBP10.99□□□□□ -0.65
COL6A3-209ENST00000472056 ITLN2Q8WWU7 325 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-209ENST00000472056 LEAP2Q969E1 77 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 SPSB2Q99619 263 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 A0A1B0GWJ7 208 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 H3BTX0 84 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 TRAV13-2A0A0B4J235 113 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 A0A1W2PPM0 123 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE12JA6NER3 117 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE7O76087 117 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE12FP0CL80 117 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE12GP0CL81 117 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE12IP0CL82 117 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 GAGE4Q13068 117 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 IGLV3-12A0A075B6K2 115 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 PSG7Q13046 419 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 TCTEX1D4Q5JR98 221 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 FAM231DQ6ZW35 169 aa10.99□□□□□ -0.65
COL6A3-209ENST00000472056 FAM223BA6NKX1 122 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 FAM223AQ8IWN6 122 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 LGALS9BQ3B8N2 356 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 LGALS9CQ6DKI2 356 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 INS-IGF2F8WCM5 200 aa10.98□□□□□ -0.65
COL6A3-209ENST00000472056 INSP01308 110 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms