RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	TMEM70	Q9BUB7	260 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	PCTP	Q9UKL6	214 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	PRND	Q9UKY0	176 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	CECR2	Q9BXF3	1484 aa		0.72	□□□□□ -2.29
PTCD3-209	ENST00000472044	ASCC3	Q8N3C0	2202 aa	Known RBP	0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	TLCD2	A6NGC4	264 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044		B4DSR2	109 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	C17orf112	F2Z3M2	114 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	AIP	O00170	330 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	CST8	O60676	142 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	NDUFC2	O95298	119 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	EIF5AL1	Q6IS14	154 aa	Known RBP	0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	PATE2	Q6UY27	113 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	EXOC3-AS1	Q8N2X6	119 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	PLPP5	Q8NEB5	264 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	NPCDR1	Q9BY65	106 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	TAS2R7	Q9NYW3	318 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	TMEM14C	Q9P0S9	112 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	CEP164	Q9UPV0	1460 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	MYH3	P11055	1940 aa		0.71	□□□□□ -2.3
PTCD3-209	ENST00000472044	EIF3A	Q14152	1382 aa	Known RBP	0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	N4BP2	Q86UW6	1770 aa	Predicted RBP	0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	COL24A1	Q17RW2	1714 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	FREM3	P0C091	2139 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	ADGB	Q8N7X0	1667 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	DUXB	A0A1W2PPF3	345 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	NCR3	O14931	201 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	ATG12	O94817	140 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	DNAL4	O96015	105 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	CEP19	Q96LK0	163 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	UHRF1BP1	Q6BDS2	1440 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	RFX7	Q2KHR2	1363 aa		0.7	□□□□□ -2.3
PTCD3-209	ENST00000472044	NISCH	Q9Y2I1	1504 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	PIK3C2A	O00443	1686 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044		G3V2T6	193 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	BANF1	O75531	89 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	ERC2-IT1	O76042	136 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	IGLV1-51	P01701	117 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	CRH	P06850	196 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	OR10J4	P0C629	311 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	NFYB	P25208	207 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	SCGB2B2	Q4G0G5	96 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	HACD4	Q5VWC8	232 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	MUCL1	Q96DR8	90 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	LYSMD1	Q96S90	227 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	CCDC94	Q9BW85	323 aa	Predicted RBP	0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	PBOV1	Q9GZY1	135 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	SH3BGRL3	Q9H299	93 aa		0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	LYRM2	Q9NU23	88 aa	Predicted RBP	0.69	□□□□□ -2.3
PTCD3-209	ENST00000472044	IGLV3-32	A0A0A0MS00	114 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044		H7C1C5	153 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	CIT	O14578	2027 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	CXCL8	P10145	99 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	EFNA4	P52798	201 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	LCN6	P62502	163 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	GNG5	P63218	68 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	CDK6	Q00534	326 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	AKR1C8P	Q5T2L2	129 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	C1orf134	Q5TEV5	83 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	HAGHL	Q6PII5	290 aa	Predicted RBP	0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	OR5D16	Q8NGK9	328 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	MED12	Q93074	2177 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	POP5	Q969H6	163 aa	Known RBP	0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	POPDC3	Q9HBV1	291 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	MED29	Q9NX70	200 aa		0.68	□□□□□ -2.3
PTCD3-209	ENST00000472044	FANCM	Q8IYD8	2048 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	MGAM	O43451	1857 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	CD2	P06729	351 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	PHB	P35232	272 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	RAB5C	P51148	216 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	GKN2	Q86XP6	184 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	OR5AS1	Q8N127	324 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044		Q8TAT8	98 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	ZNF431	Q8TF32	576 aa	Predicted RBP	0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	GINS3	Q9BRX5	216 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	OR2J1	Q9GZK6	312 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	PSTPIP2	Q9H939	334 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	STOML2	Q9UJZ1	356 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	TENM3	Q9P273	2699 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	CAMSAP2	Q08AD1	1489 aa		0.67	□□□□□ -2.3
PTCD3-209	ENST00000472044	CD109	Q6YHK3	1445 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	TRAV27	A0A087WT01	109 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	TRAV5	A0A0B4J249	113 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044		A0A1W2PPM0	123 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044		M0R233	179 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	KLF7	O75840	302 aa	Predicted RBP	0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	IFNA1	P01562	189 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	APOA2	P02652	100 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	TRGC2	P03986	189 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	PRB4	P10163	310 aa	Predicted RBP	0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	COX7C	P15954	63 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	INSL3	P51460	131 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	TEN1	Q86WV5	123 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	SBSPON	Q8IVN8	264 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	GPX7	Q96SL4	187 aa	Predicted RBP	0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	OR52A1	Q9UKL2	312 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	TNFSF18	Q9UNG2	199 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	SSR3	Q9UNL2	185 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	FRMPD1	Q5SYB0	1578 aa		0.66	□□□□□ -2.3
PTCD3-209	ENST00000472044	RIIAD1	A6NNX1	92 aa		0.65	□□□□□ -2.31

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms